Пакет: clustalw (2.1+lgpl-7)

[ Източник: clustalw  ]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Етикети: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, interface::commandline, User Interface: Text-based Interactive, Role: role::program, scope::utility, Purpose: Comparing, Supports Format: works-with-format::plaintext, works-with::TODO

Други пакети, свързани с clustalw

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• sug: clustalx

  Multiple alignment of nucleic acid and protein sequences (graphical interface)

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• enh: bioperl-run

  BioPerl wrappers: scripts

• enh: emboss

  European molecular biology open software suite

• enh: t-coffee

  Multiple Sequence Alignment

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amd64	275,1 кБ	787,0 кБ	[списък на файловете]
arm64	241,9 кБ	710,0 кБ	[списък на файловете]
armel	240,2 кБ	718,0 кБ	[списък на файловете]
armhf	249,6 кБ	542,0 кБ	[списък на файловете]
i386	294,8 кБ	834,0 кБ	[списък на файловете]
mips64el	259,1 кБ	941,0 кБ	[списък на файловете]
mipsel	258,4 кБ	912,0 кБ	[списък на файловете]
ppc64el	276,5 кБ	918,0 кБ	[списък на файловете]
s390x	247,5 кБ	794,0 кБ	[списък на файловете]