Пакет: bamtools (2.5.1+dfsg-9)

[ Източник: bamtools  ]

toolkit for manipulating BAM (genome alignment) files

BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.

BamTools provides both a C++ API for BAM file support as well as a command-line toolkit.

This is the bamtools command-line toolkit.

Available bamtools commands:

 convert  Converts between BAM and a number of other formats
 count    Prints number of alignments in BAM file(s)
 coverage Prints coverage statistics from the input BAM file
 filter   Filters BAM file(s) by user-specified criteria
 header   Prints BAM header information
 index    Generates index for BAM file
 merge    Merge multiple BAM files into single file
 random   Select random alignments from existing BAM file(s), intended more
          as a testing tool.
 resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
 revert   Removes duplicate marks and restores original base qualities
 sort     Sorts the BAM file according to some criteria
 split    Splits a BAM file on user-specified property, creating a new BAM
          output file for each value found
 stats    Prints some basic statistics from input BAM file(s)

Етикети: Implemented in: C++, Role: Program

Други пакети, свързани с bamtools

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [не amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libjsoncpp24 (>= 1.9.4)

  library for reading and writing JSON for C++

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [не armel, armhf]

Изтегляне на bamtools

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	178,7 кБ	598,0 кБ	[списък на файловете]
arm64	153,2 кБ	534,0 кБ	[списък на файловете]
armel	147,1 кБ	509,0 кБ	[списък на файловете]
armhf	154,9 кБ	393,0 кБ	[списък на файловете]
i386	190,4 кБ	629,0 кБ	[списък на файловете]
mips64el	146,2 кБ	652,0 кБ	[списък на файловете]
mipsel	147,5 кБ	635,0 кБ	[списък на файловете]
ppc64el	174,3 кБ	666,0 кБ	[списък на файловете]
s390x	152,2 кБ	586,0 кБ	[списък на файловете]