Пакет: mindthegap (2.3.0-2)

[ Източник: mindthegap  ]

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

Други пакети, свързани с mindthegap

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg-7)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	242,5 кБ	1 037,0 кБ	[списък на файловете]
arm64	213,9 кБ	985,0 кБ	[списък на файловете]
mips64el	197,5 кБ	1 171,0 кБ	[списък на файловете]
ppc64el	235,1 кБ	1 177,0 кБ	[списък на файловете]