Пакет: bandage (0.9.0-2)

[ Източник: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Етикети: Interface Toolkit: Qt

Други пакети, свързани с bandage

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 4.0) [не arm64, mips64el]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [arm64, mips64el]

• dep: libqt5core5a (>= 5.15.1)

  Qt 5 core module

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

  или libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.15.1)

  Qt 5 widgets module

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	948,0 кБ	2 239,0 кБ	[списък на файловете]
arm64	877,0 кБ	2 145,0 кБ	[списък на файловете]
armel	850,8 кБ	2 012,0 кБ	[списък на файловете]
armhf	854,4 кБ	1 628,0 кБ	[списък на файловете]
i386	981,9 кБ	2 287,0 кБ	[списък на файловете]
mips64el	897,8 кБ	2 894,0 кБ	[списък на файловете]
mipsel	900,4 кБ	2 732,0 кБ	[списък на файловете]
ppc64el	942,2 кБ	2 654,0 кБ	[списък на файловете]
s390x	878,4 кБ	2 326,0 кБ	[списък на файловете]