Пакет: bali-phy (3.6.1+dfsg-1)

[ Източник: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Други пакети, свързани с bali-phy

• dep: libboost-chrono1.74.0 (>= 1.74.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libboost-random1.74.0 (>= 1.74.0)

  Boost Random Number Library

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  също и виртуален пакет, предлаган от gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	6 064,3 кБ	35 817,0 кБ	[списък на файловете]
arm64	5 434,7 кБ	32 461,0 кБ	[списък на файловете]
armel	4 569,9 кБ	29 779,0 кБ	[списък на файловете]
armhf	4 270,2 кБ	22 071,0 кБ	[списък на файловете]
i386	5 850,5 кБ	35 191,0 кБ	[списък на файловете]
mips64el	5 622,3 кБ	42 347,0 кБ	[списък на файловете]
mipsel	5 563,3 кБ	40 550,0 кБ	[списък на файловете]
ppc64el	6 142,8 кБ	40 895,0 кБ	[списък на файловете]
s390x	4 982,7 кБ	35 461,0 кБ	[списък на файловете]