Пакет: r-bioc-ggbio (1.46.0-1)

[ Източник: r-bioc-ggbio  ]

Visualization tools for genomic data

The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.

Други пакети, свързани с r-bioc-ggbio

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• dep: r-api-bioc-3.16

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

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• dep: r-bioc-annotationdbi

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• dep: r-bioc-annotationfilter

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• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings

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• dep: r-bioc-biovizbase (>= 1.29.2)

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• dep: r-bioc-bsgenome

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• dep: r-bioc-ensembldb (>= 1.99.13)

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• dep: r-bioc-genomeinfodb (>= 1.1.3)

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• dep: r-bioc-genomicalignments (>= 1.1.16)

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• dep: r-bioc-genomicfeatures (>= 1.29.11)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.29.14)

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• dep: r-bioc-iranges (>= 2.11.16)

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• dep: r-bioc-organismdbi

  smooth interfacing of different database packages

• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.16)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.13.13)

  BioConductor S4 implementation of vectors and lists

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• dep: r-cran-ggally

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• dep: r-cran-ggplot2 (>= 1.0.0)

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

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• dep: r-cran-gtable

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• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-reshape2

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• dep: r-cran-rlang

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• dep: r-cran-scales

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• sug: r-cran-knitr

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• sug: r-cran-tinytex

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