Пакет: r-bioc-genomicranges (1.50.2+dfsg-1)

[ Източник: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Други пакети, свързани с r-bioc-genomicranges

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.4) [не arm64, ppc64el]

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.16

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-iranges (>= 2.31.2)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.29.2)

  BioConductor representation and manpulation of external sequences

• sug: r-bioc-annotate

  BioConductor annotation for microarrays

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.25.3)

  GNU R string objects representing biological sequences

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-dexseq

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-keggrest

  GNU R client-side REST access to KEGG

• sug: r-bioc-rsamtools (>= 1.13.53)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment (>= 0.1.5)

  BioConductor assay container

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-digest

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• sug: r-cran-knitr

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• sug: r-cran-matrix

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• sug: r-cran-rmarkdown

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• sug: r-cran-runit

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	1 753,8 кБ	2 743,0 кБ	[списък на файловете]
arm64	1 753,2 кБ	2 759,0 кБ	[списък на файловете]
armel	1 751,3 кБ	2 758,0 кБ	[списък на файловете]
armhf	1 751,5 кБ	2 758,0 кБ	[списък на файловете]
i386	1 754,3 кБ	2 750,0 кБ	[списък на файловете]
mips64el	1 751,2 кБ	2 764,0 кБ	[списък на файловете]
mipsel	1 751,3 кБ	2 763,0 кБ	[списък на файловете]
ppc64el	1 753,6 кБ	2 759,0 кБ	[списък на файловете]
s390x	1 752,9 кБ	2 743,0 кБ	[списък на файловете]