Package: infernal (1.0.2-2)

[ Source: infernal  ]

inference of RNA secondary structural alignments

Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.

The tool is an integral component of the Rfam database.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, use::analysing

Other Packages Related to infernal

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.3) [amd64, i386, mips, mipsel]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

  GCC 支援函式庫

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Architecture	Package Size	Installed Size	Files
amd64	4,744.7 kB	10,427.0 kB	[list of files]
armel	4,004.2 kB	8,184.0 kB	[list of files]
armhf	3,820.2 kB	6,262.0 kB	[list of files]
i386	4,336.7 kB	10,232.0 kB	[list of files]
ia64	6,463.8 kB	18,736.0 kB	[list of files]
kfreebsd-amd64	4,745.4 kB	10,427.0 kB	[list of files]
kfreebsd-i386	4,337.3 kB	10,201.0 kB	[list of files]
mips	4,295.8 kB	9,806.0 kB	[list of files]
mipsel	4,107.1 kB	9,244.0 kB	[list of files]
powerpc	3,998.2 kB	8,316.0 kB	[list of files]
s390	4,007.8 kB	8,584.0 kB	[list of files]
s390x	4,898.0 kB	11,089.0 kB	[list of files]
sparc	4,088.6 kB	8,760.0 kB	[list of files]