Package: med-bio (1.8)

[ Source: debian-med  ]

Debian Med micro-biology packages

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences.

Tags: Field: Biology, Role: Metapackage, Application Suite: Debian

Other Packages Related to med-bio

• dep: med-config (= 1.8)

  Debian Med general config package

• dep: med-tasks (= 1.8)

  Debian Med tasks for tasksel

• rec: adun.app

  Molecular Simulator for GNUstep

• rec: alien-hunter

  Interpolated Variable Order Motifs to identify horizontally acquired DNA

• rec: altree

  program to perform phylogeny based analyses

• rec: amap-align

  Protein multiple alignment by sequence annealing

• rec: autodock

  analysis of ligand binding to protein structure

• rec: ballview

  A free molecular modeling and molecular graphics tool

• rec: blast2

  Basic Local Alignment Search Tool

• rec: boxshade

  Pretty-printing of multiple sequence alignments

• rec: bwa

  Burrows-Wheeler Aligner

• rec: dialign

  Segment-based multiple sequence alignment

• rec: dialign-tx

  Segment-based multiple sequence alignment

• rec: emboss

  the european molecular biology open software suite

• rec: exonerate

  generic tool for pairwise sequence comparison

• rec: fastdnaml

  Tool for construction of phylogenetic trees of DNA sequences

• rec: fastlink

  A faster version of pedigree programs of Linkage

• rec: gamgi

  construct, view and analyse atomic structures

• rec: garlic

  A visualization program for biomolecules

• rec: gdpc

  visualiser of molecular dynamic simulations

• rec: gff2aplot

  pair-wise alignment-plots for genomic sequences in PostScript

• rec: gff2ps

  produces PostScript graphical output from GFF-files

• rec: ghemical

  A GNOME molecular modelling environment

• rec: glam2

  gapped protein motifs from unaligned sequences

• rec: gromacs

  Molecular dynamics simulator, with building and analysis tools

• rec: hmmer

  profile hidden Markov models for protein sequence analysis

• rec: infernal

  inference of RNA secondary structural alignments

• rec: kalign

  Global and progressive multiple sequence alignment

• rec: last-align

  genome-scale comparison of biological sequences

• rec: loki

  MCMC linkage analysis on general pedigrees

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: maq

  maps short fixed-length polymorphic DNA sequence reads to reference sequences

• rec: massxpert

  linear polymer mass spectrometry software

• rec: melting

  compute the melting temperature of nucleic acid duplex

• rec: mipe

  Tools to store PCR-derived data

• rec: mummer

  Efficient sequence alignment of full genomes

• rec: muscle

  Multiple alignment program of protein sequences

• rec: mustang

  multiple structural alignment of proteins

• rec: ncbi-epcr

  Tool to test a DNA sequence for the presence of sequence tagged sites

• rec: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• rec: ncbi-tools-x11

  NCBI libraries for biology applications (X-based utilities)

• rec: ncoils

  [Biology] coiled coil secondary structure prediction

• rec: njplot

  A phylogenetic tree drawing program

• rec: perlprimer

  Graphical design of primers for PCR

• rec: phyml

  Phylogenetic estimation using Maximum Likelihood

• rec: picard-tools

  Command line tools to manipulate SAM and BAM files

• rec: plasmidomics

  draw plasmids and vector maps with PostScript graphics export

• rec: plink

  whole-genome association analysis toolset

• rec: poa

  Partial Order Alignment for multiple sequence alignment

• rec: primer3

  Tool to design flanking oligo nucleotides for DNA amplification

• rec: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• rec: proda

  multiple alignment of protein sequences

• rec: pymol

  Molecular Graphics System

• rec: r-bioc-hilbertvis

  GNU R package to visualise long vector data

• rec: r-cran-qtl

  GNU R package for genetic marker linkage analysis

• rec: r-other-bio3d

  GNU R package for biological structure analysis

• rec: r-other-mott-happy

  GNU R package for fine-mapping complex diseases

• rec: rasmol

  Visualize biological macromolecules

• rec: readseq

  [Biology] Conversion between sequence formats

• rec: rnahybrid

  Fast and effective prediction of microRNA/target duplexes

• rec: samtools

  processing sequence alignments in SAM and BAM formats

• rec: sibsim4

  align expressed RNA sequences on a DNA template

• rec: sigma-align

  Simple greedy multiple alignment of non-coding DNA sequences

• rec: sim4

  tool for aligning cDNA and genomic DNA

• rec: ssake

  genomics application for assembling millions of very short DNA sequences

• rec: staden-io-lib-utils

  programs for maniuplating DNA sequencing files

• rec: t-coffee

  Multiple Sequence Alignment

• rec: theseus

  superimpose macromolecules using maximum likelihood

• rec: tigr-glimmer

  Gene detection in archea and bacteria

• rec: tree-puzzle

  Reconstruction of phylogenetic trees by maximum likelihood

  or tree-ppuzzle

  Parallelized reconstruction of phylogenetic trees by maximum likelihood

• rec: treeviewx

  Displays and prints phylogenetic trees

• rec: velvet

  Nucleic acid sequence assembler for very short reads

• rec: wise

  comparison of biopolymers, commonly DNA and protein sequences

• sug: acedb-other

  Package not available

• sug: acedb-other-belvu

  Package not available

• sug: acedb-other-dotter

  Package not available

• sug: act

  Package not available

• sug: agdbnet

  Package not available

• sug: amos-assembler

  Package not available

• sug: amoscmp

  Package not available

• sug: arb

  Package not available

• sug: artemis

  Package not available

• sug: asap

  Package not available

• sug: autodocktools

  Package not available

• sug: axparafit

  Package not available

• sug: axpcoords

  Package not available

• sug: bagphenotype

  Package not available

• sug: bambus

  Package not available

• sug: beast-mcmc

  Package not available

• sug: big-blast

  Package not available

• sug: bio-mauve

  Package not available

• sug: blixem

  Package not available

• sug: bowtie

  Package not available

• sug: btk-core

  Package not available

• sug: cactus

  Package not available

• sug: caftools

  Package not available

• sug: cap3

  Package not available

• sug: cd-hit

  Package not available

• sug: cdna-db

  Package not available

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: clustalw-mpi

  MPI-distributed global sequence alignment with ClustalW

• sug: clustalx

  GUI for Clustal W

• sug: cluster3

  Package not available

• sug: coalesce

  Package not available

• sug: codonw

  Package not available

• sug: compclust

  Package not available

• sug: contralign

  Package not available

• sug: coot

  Package not available

• sug: copycat

  Package not available

• sug: crossbow

  Package not available

• sug: cytoscape

  Package not available

• sug: das-proserver

  Package not available

• sug: dazzle

  Package not available

• sug: decipher

  Package not available

• sug: denoiser

  Package not available

• sug: dotter

  Package not available

• sug: dotur

  Package not available

• sug: ecell

  Package not available

• sug: elph

  Package not available

• sug: embassy-domainatrix

  Package not available

• sug: embassy-domalign

  Package not available

• sug: embassy-domsearch

  Package not available

• sug: embassy-phylip

  Package not available

• sug: emboss-explorer

  web-based GUI to EMBOSS

• sug: emboss-kaptain

  Package not available

• sug: est-db

  Package not available

• sug: estferret

  Package not available

• sug: estscan

  Package not available

• sug: exalt

  Package not available

• sug: excavator

  Package not available

• sug: fasta

  Package not available

• sug: fastx-toolkit

  Package not available

• sug: figaro

  Package not available

• sug: finex

  Package not available

• sug: fluctuate

  Package not available

• sug: forester

  Package not available

• sug: galaxy

  Package not available

• sug: gbioseq

  Package not available

• sug: gbrowse

  Package not available

• sug: genesplicer

  Package not available

• sug: genetrack

  Package not available

• sug: genezilla

  Package not available

• sug: genographer

  Package not available

• sug: gentle

  suite to plan genetic cloning

• sug: glimmerhmm

  Package not available

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: gmv

  Package not available

• sug: grogui

  Package not available

• sug: haploview

  Package not available

• sug: hawkeye

  Package not available

• sug: hexamer

  Package not available

• sug: hilbertvisgui

  Package not available

• sug: igv

  Integrative Genomics Viewer

• sug: jalview

  Package not available

• sug: jigsaw

  Package not available

• sug: jmol

  Package not available

• sug: jstreeview

  Package not available

• sug: jtreeview

  Package not available

• sug: kempbasu

  Package not available

• sug: lagan

  Package not available

• sug: lamarc

  Package not available

• sug: logomat-m

  Package not available

• sug: lucy

  Package not available

• sug: mage2tab

  Package not available

• sug: martj

  Package not available

• sug: mauvealigner

  Package not available

• sug: maxd

  Package not available

• sug: melting-gui

  graphical interface to compute the melting temperature of nucleic acid duplex

• sug: meme

  Package not available

• sug: mesquite

  Package not available

• sug: migrate

  Package not available

• sug: minimus

  Package not available

• sug: mira

  Package not available

• sug: mirbase

  Package not available

• sug: molekel

  Package not available

• sug: molphy

  Program Package for MOLecular PHYlogenetics

• sug: mothur

  Package not available

• sug: mozilla-biofox

  extension of bioinformatics tools to Iceape and Iceweasel browsers

• sug: mrbayes

  Package not available

• sug: msatfinder

  Package not available

• sug: mummergpu

  Package not available

• sug: murasaki

  Package not available

• sug: mview

  Package not available

• sug: ncbi-tools++

  Package not available

• sug: ngila

  Package not available

• sug: obo-edit

  Package not available

• sug: oligoarrayaux

  Package not available

• sug: omegamap

  Package not available

• sug: operondb

  Package not available

• sug: paml

  Package not available

• sug: partigene

  Package not available

• sug: patman

  Package not available

• sug: pdb2pqr

  Package not available

• sug: pfaat

  Package not available

• sug: pftools

  Package not available

• sug: phagefinder

  Package not available

• sug: phpphylotree

  Package not available

• sug: phylip

  package of programs for inferring phylogenies

• sug: phylographer

  Package not available

• sug: phylowin

  Package not available

• sug: populations

  Package not available

• sug: prank

  Package not available

• sug: proalign

  Package not available

• sug: profit

  Package not available

• sug: prot4est

  Package not available

• sug: pyrophosphate-tools

  Package not available

• sug: python-cogent

  framework for genomic biology

• sug: python-pynast

  Package not available

• sug: qiime

  Package not available

• sug: qtlcart

  Package not available

• sug: r-ape

  Package not available

• sug: r-other-genabel

  Package not available

• sug: r-other-valdar-bagphenotype.library

  Package not available

• sug: raster3d

  tools for generating images of proteins or other molecules

• sug: raxml

  Package not available

• sug: rbs-finder

  Package not available

• sug: recombine

  Package not available

• sug: repeatfinder

  Package not available

• sug: reputer

  Package not available

• sug: roche454ace2caf

  Package not available

• sug: rose

  Package not available

• sug: rosetta

  Package not available

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: seq-gen

  Package not available

• sug: seqan-apps

  A C++ template library for the analysis of sequences

• sug: sequenceconverter.app

  Package not available

• sug: smile

  Package not available

• sug: spice

  Package not available

• sug: splitstree

  Package not available

• sug: ssaha

  Package not available

• sug: tacg

  Package not available

• sug: taverna

  Package not available

• sug: taxinspector

  Package not available

• sug: tetra

  Package not available

• sug: tigr-assembler

  Package not available

• sug: tm-align

  Package not available

• sug: trace2dbest

  Package not available

• sug: tracetuner

  Package not available

• sug: transtermhp

  Package not available

• sug: treebuilder3d

  Package not available

• sug: treeplot

  Package not available

• sug: treetime

  Package not available

• sug: treevolve

  Package not available

• sug: trnascan-se

  Package not available

• sug: twain

  Package not available

• sug: uniprime

  Package not available

• sug: vienna-rna

  Package not available

• sug: wgs-assembler

  Package not available

Download med-bio

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	18.8 kB	180.0 kB	[list of files]