Package: clustalx (2.1+lgpl-2~bpo60+1) [backports]

[ Source: clustalx  ]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Other Packages Related to clustalx

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.2.5) [amd64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [armel, mips, mipsel, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.2) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 [kfreebsd-amd64, kfreebsd-i386]

  GCC 支援函式庫

  dep: libgcc1 (>= 1:4.1.1) [not armel, kfreebsd-amd64, kfreebsd-i386]

  dep: libgcc1 (>= 1:4.4.0) [armel]

• dep: libqt4-xml (>= 4:4.5.3)

  Qt 4 XML module

• dep: libqtcore4 (>= 4:4.6.1)

  Qt 4 core module

• dep: libqtgui4 (>= 4:4.5.3)

  Qt 4 GUI module

• dep: libstdc++6 [kfreebsd-amd64, kfreebsd-i386]

  GNU標準C++函式庫第三版

  dep: libstdc++6 (>= 4.4.0) [not kfreebsd-amd64, kfreebsd-i386]

• dep: libunwind7 [ia64]

  用來決定程式執行時呼叫鍊的函式庫。

• sug: boxshade

  Pretty-printing of multiple sequence alignments

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: texshade

  Package not available

  or texlive-latex-extra

  TeX Live: LaTeX supplementary packages

Download clustalx

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	548.4 kB	1,444.0 kB	[list of files]
armel	516.4 kB	1,296.0 kB	[list of files]
i386	533.3 kB	1,412.0 kB	[list of files]
ia64	773.0 kB	2,880.0 kB	[list of files]
kfreebsd-amd64	548.3 kB	1,402.0 kB	[list of files]
kfreebsd-i386	532.0 kB	1,370.0 kB	[list of files]
mips	549.8 kB	1,912.0 kB	[list of files]
mipsel	547.8 kB	1,912.0 kB	[list of files]
powerpc	561.4 kB	1,476.0 kB	[list of files]
s390	523.3 kB	1,424.0 kB	[list of files]
sparc	539.0 kB	1,416.0 kB	[list of files]