套件：r-bioc-densvis（1.12.1+dfsg-1 以及其他的）

[ 原始碼： r-bioc-densvis  ]

density-preserving data visualization via non-linear dimensionality reduction

Implements the density-preserving modification to t-SNE and UMAP described by Narayan et al. (2020) <doi:10.1101/2020.05.12.077776>. The non-linear dimensionality reduction techniques t-SNE and UMAP enable users to summarise complex high-dimensional sequencing data such as single cell RNAseq using lower dimensional representations. These lower dimensional representations enable the visualisation of discrete transcriptional states, as well as continuous trajectory (for example, in early development). However, these methods focus on the local neighbourhood structure of the data. In some cases, this results in misleading visualisations, where the density of cells in the low-dimensional embedding does not represent the transcriptional heterogeneity of data in the original high-dimensional space. den-SNE and densMAP aim to enable more accurate visual interpretation of high-dimensional datasets by producing lower-dimensional embeddings that accurately represent the heterogeneity of the original high-dimensional space, enabling the identification of homogeneous and heterogeneous cell states. This accuracy is accomplished by including in the optimisation process a term which considers the local density of points in the original high-dimensional space. This can help to create visualisations that are more representative of heterogeneity in the original high-dimensional space.

其他與 r-bioc-densvis 有關的套件

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  或者 libblas.so.3

  本虛擬套件由這些套件填實： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29) [除 alpha, ia64, sh4]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64, x32]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支援函式庫

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支援函式庫

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  或者 liblapack.so.3

  本虛擬套件由這些套件填實： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  本虛擬套件由這些套件填實： r-base-core

• dep: r-api-bioc-3.17 [除 amd64, arm64]

  套件暫時不可用

• dep: r-api-bioc-3.18 [amd64, arm64]

  本虛擬套件由這些套件填實： r-bioc-biocgenerics

• dep: r-bioc-basilisk

  freezing Python dependencies inside Bioconductor packages

• dep: r-cran-assertthat

  GNU R easy pre and post assertions

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rtsne [amd64, arm64]

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-rtsne [除 amd64, arm64]

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• sug: r-cran-testthat

  GNU R testsuite

• sug: r-cran-uwot

  GNU R uniform manifold approximation and projection (UMAP)

下載 r-bioc-densvis

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	1.10.3+dfsg-1	79。3 kB	214。0 kB	[檔案列表]
amd64	1.12.1+dfsg-1	81。9 kB	202。0 kB	[檔案列表]
arm64	1.12.1+dfsg-1	76。3 kB	214。0 kB	[檔案列表]
hppa （非官方移植版）	1.10.3+dfsg-1	81。8 kB	212。0 kB	[檔案列表]
ia64 （非官方移植版）	1.10.3+dfsg-1	92。0 kB	305。0 kB	[檔案列表]
m68k （非官方移植版）	1.10.3+dfsg-1	77。7 kB	189。0 kB	[檔案列表]
ppc64 （非官方移植版）	1.10.3+dfsg-1	86。1 kB	281。0 kB	[檔案列表]
sh4 （非官方移植版）	1.10.3+dfsg-1	87。3 kB	213。0 kB	[檔案列表]
sparc64 （非官方移植版）	1.10.3+dfsg-1	74。3 kB	1，115。0 kB	[檔案列表]
x32 （非官方移植版）	1.10.3+dfsg-1	80。8 kB	193。0 kB	[檔案列表]