套件：seaview（1:5.0.4-1）

[ 原始碼： seaview  ]

Multiplatform interface for sequence alignment and phylogeny

SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.

SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c, implemented-in::c++, 使用者介面: 命令行, interface::graphical, interface::x11, 網路: 客戶端, Network Protocol: 需要一個額外的標籤, 角色: role::program, scope::utility, Interface Toolkit: FLTK, Purpose: 需要一個額外的標籤, use::comparing, use::editing, 列印, use::viewing, works-with-format::plaintext, 處理: works-with::biological-sequence, x11::application

其他與 seaview 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libfltk-images1.3

  Fast Light Toolkit - image loading support

• dep: libfltk1.3 (>= 1.3.4)

  Fast Light Toolkit - main shared library

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: clustalo

  General-purpose multiple sequence alignment program for proteins

• rec: muscle

  Multiple alignment program of protein sequences

• rec: phyml

  Phylogenetic estimation using Maximum Likelihood

下載 seaview

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	387。4 kB	1，010。0 kB	[檔案列表]
arm64	351。3 kB	982。0 kB	[檔案列表]
armel	325。6 kB	910。0 kB	[檔案列表]
armhf	325。9 kB	690。0 kB	[檔案列表]
i386	403。3 kB	1，067。0 kB	[檔案列表]
mips64el	378。7 kB	1，190。0 kB	[檔案列表]
mipsel	379。9 kB	1，147。0 kB	[檔案列表]
ppc64el	425。1 kB	1，278。0 kB	[檔案列表]
s390x	356。5 kB	1，058。0 kB	[檔案列表]