全部搜尋項
[  buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 原始碼： spades  ]

套件：spades（3.15.5+dfsg-2）

spades 的相關連結

Screenshot

Debian 的資源：

下載原始碼套件 spades：

維護小組：

外部的資源：

相似套件：

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

This package provides the following additional pipelines: 

 * metaSPAdes – a pipeline for metagenomic data sets
 * plasmidSPAdes – a pipeline for extracting and assembling plasmids
   from WGS data sets
 * metaplasmidSPAdes – a pipeline for extracting and assembling
   plasmids from metagenomic data sets
 * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
 * truSPAdes – a module for TruSeq barcode assembly
 * biosyntheticSPAdes – a module for biosynthetic gene cluster
   assembly with paired-end reads

SPAdes provides several stand-alone binaries with relatively simple command-line interface: k-mer counting (spades-kmercounter), assembly graph construction (spades-gbuilder) and long read to graph aligner (spades-gmapper).

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 實做語言: Python, 使用者介面: interface::commandline, role::program, 範圍: 實用程式, 處理: works-with::biological-sequence, works-with::file

其他與 spades 有關的套件

  • 依賴
  • 推薦
  • 建議
  • 增強

下載 spades

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 8，460。1 kB36，984。0 kB [檔案列表]