全部搜索项
[  buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码： spades  ]

软件包：spades（3.15.5+dfsg-7）

spades 的相关链接

Screenshot

Debian 的资源：

下载源码包 spades：

维护小组：

外部的资源：

相似软件包：

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

This package provides the following additional pipelines: 

 * metaSPAdes – a pipeline for metagenomic data sets
 * plasmidSPAdes – a pipeline for extracting and assembling plasmids
   from WGS data sets
 * metaplasmidSPAdes – a pipeline for extracting and assembling
   plasmids from metagenomic data sets
 * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
 * truSPAdes – a module for TruSeq barcode assembly
 * biosyntheticSPAdes – a module for biosynthetic gene cluster
   assembly with paired-end reads

SPAdes provides several stand-alone binaries with relatively simple command-line interface: k-mer counting (spades-kmercounter), assembly graph construction (spades-gbuilder) and long read to graph aligner (spades-gmapper).

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 实做语言: Python, 用户接口: interface::commandline, role::program, 范围: 实用程序, 处理: works-with::biological-sequence, works-with::file

其他与 spades 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 spades

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 8,808.6 kB38,720.0 kB [文件列表]