Package: dialign-tx (1.0.2-1)

[ Source: dialign-t  ]

Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Tags: Field: Biology, Bioinformatics, Implemented in: C, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to dialign-tx

• dep: dialign-tx-data (= 1.0.2-1)

  Common data files for dialign-tx

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.7-1) [not ia64, kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.7-1) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

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Architecture	Package Size	Installed Size	Files
amd64	56.4 kB	164.0 kB	[list of files]
armel	57.7 kB	160.0 kB	[list of files]
i386	51.4 kB	152.0 kB	[list of files]
ia64	82.7 kB	288.0 kB	[list of files]
kfreebsd-amd64	56.4 kB	134.0 kB	[list of files]
kfreebsd-i386	51.3 kB	122.0 kB	[list of files]
mips	57.5 kB	184.0 kB	[list of files]
mipsel	57.7 kB	184.0 kB	[list of files]
powerpc	59.3 kB	164.0 kB	[list of files]
s390	55.3 kB	156.0 kB	[list of files]
sparc	55.5 kB	164.0 kB	[list of files]