软件包：sra-toolkit（3.0.3+dfsg-7 以及其他的）
sra-toolkit 的相关链接
Debian 的资源：
下载源码包 sra-sdk：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Charles Plessy (QA 页面)
- Andreas Tille (QA 页面)
- Aaron M. Ucko (QA 页面)
外部的资源：
- 主页 [github.com]
相似软件包：
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
Other tools distributed in this package are:
abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
其他与 sra-toolkit 有关的软件包
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- dep: libbz2-1.0
- 高品质块排序文件压缩程序库 - 运行时库
-
- dep: libc6 (>= 2.16) [x32]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.38) [除 x32]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC 支持库
- dep: libgcc-s1 (>= 4.5) [arm64]
-
- dep: libhdf5-103-1t64 [除 x32]
- HDF5 C runtime files - serial version
-
- dep: libmagic1t64 (>= 5.12) [除 x32]
- 使用“魔数”识别文件中的数据类型 - 库文件
-
- dep: libncbi-vdb3 (>= 3.0.2+dfsg) [除 x32]
- libraries for using data in the INSDC Sequence Read Archives
-
- dep: libncbi-wvdb3 (>= 3.0.2+dfsg) [除 x32]
- virtual layer update module of ncbi-vdb library
-
- dep: libre2-10 (>= 20201101+dfsg) [除 x32]
- efficient, principled regular expression library
-
- dep: libssl3t64 (>= 3.0.0) [除 x32]
- 安全套接字层工具箱 - 共享库
-
- dep: libstdc++6 (>= 13.1) [除 x32]
- GNU 标准 C++ 库，第3版
-
- dep: libxml2 (>= 2.6.27) [x32]
- GNOME XML 库
- dep: libxml2 (>= 2.7.4) [除 x32]
-
- dep: sra-toolkit-libs0 [x32]
- Libraries for the SRA Toolkit
-
- dep: zlib1g (>= 1:1.1.4) [x32]
- 压缩库 - 运行时
- dep: zlib1g (>= 1:1.2.2) [除 x32]
-
- rec: med-config
- Debian Med general config package