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[ 源代码: sibsim4  ]

软件包: sibsim4 (0.17-1)

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: 

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

标签: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Searching, Supports Format: Plain Text

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下载 sibsim4

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
alpha 37.2 kB116 kB [文件列表]
amd64 32.0 kB104 kB [文件列表]
armel 32.9 kB104 kB [文件列表]
avr32 (非官方移植版) 34.0 kB92 kB [文件列表]
hppa 33.6 kB104 kB [文件列表]
hurd-i386 29.9 kB96 kB [文件列表]
i386 30.4 kB96 kB [文件列表]
ia64 47.3 kB152 kB [文件列表]
kfreebsd-amd64 33.2 kB80 kB [文件列表]
kfreebsd-i386 31.3 kB72 kB [文件列表]
m68k (非官方移植版) 27.6 kB92 kB [文件列表]
mips 34.2 kB112 kB [文件列表]
mipsel 34.2 kB112 kB [文件列表]
powerpc 33.9 kB108 kB [文件列表]
s390 33.7 kB104 kB [文件列表]
sparc 31.2 kB104 kB [文件列表]