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[ 源代码: epcr  ]

软件包: ncbi-epcr (2.3.10-1 以及其他的)

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

标签: Field: Biology, Role: Program, Scope: Utility

其它与 ncbi-epcr 有关的软件包

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  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
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  • dep: libc0.3 (>= 2.3.5-1) [hurd-i386]
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  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C 语言运行库：共享库
    同时作为一个虚包由这些包填实: libc6-udeb
    dep: libc6 (>= 2.7-1) [除 alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C 语言运行库：共享库
    同时作为一个虚包由这些包填实: libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-12) [hurd-i386]
    GCC支持库
    dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, ia64]
    dep: libgcc1 (>= 1:4.2.1-4) [mips, mipsel, powerpc, s390, sparc]
    dep: libgcc1 (>= 1:4.3) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    GCC支持库
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
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  • dep: libstdc++6 (>= 4.1.1-12) [hurd-i386]
    GNU 标准 C++ 库第三版
    dep: libstdc++6 (>= 4.2.1-4) [除 armel, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.3) [armel, kfreebsd-amd64, kfreebsd-i386]
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  • rec: bioperl
    Perl tools for computational molecular biology
  • rec: ncbi-epcr-data
    软件包暂时不可用
  • sug: bioperl
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下载 ncbi-epcr

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
alpha 2.3.10-1 211.0 kB640 kB [文件列表]
amd64 2.3.10-1 195.2 kB520 kB [文件列表]
arm 2.3.10-1 219.1 kB548 kB [文件列表]
armel 2.3.10-1 183.8 kB472 kB [文件列表]
hppa 2.3.10-1 231.9 kB584 kB [文件列表]
hurd-i386 1.2.0-3 14.4 kB76 kB [文件列表]
i386 2.3.10-1 188.5 kB476 kB [文件列表]
ia64 2.3.10-1 268.8 kB892 kB [文件列表]
kfreebsd-amd64 (非官方移植版) 2.3.10-1 196.4 kB464 kB [文件列表]
kfreebsd-i386 (非官方移植版) 2.3.10-1 191.8 kB432 kB [文件列表]
m68k 2.3.10-1 177.9 kB484 kB [文件列表]
mips 2.3.10-1 209.7 kB692 kB [文件列表]
mipsel 2.3.10-1 209.8 kB692 kB [文件列表]
powerpc 2.3.10-1 204.6 kB544 kB [文件列表]
s390 2.3.10-1 192.1 kB504 kB [文件列表]
sparc 2.3.10-1 196.9 kB528 kB [文件列表]