软件包：mosdepth（0.3.6+ds-1 以及其他的）

[ 源代码： mosdepth  ]

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

其他与 mosdepth 有关的软件包

• dep: libc6 (>= 2.33) [sparc64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.34) [除 sparc64]

• dep: libhts-dev [除 sparc64]

  development files for the HTSlib

下载 mosdepth

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	0.3.6+ds-1	166.4 kB	585.0 kB	[文件列表]
arm64	0.3.6+ds-1	160.2 kB	597.0 kB	[文件列表]
armel	0.3.6+ds-1	149.7 kB	537.0 kB	[文件列表]
armhf	0.3.6+ds-1	152.9 kB	417.0 kB	[文件列表]
i386	0.3.6+ds-1	180.4 kB	624.0 kB	[文件列表]
mips64el	0.3.6+ds-1	153.4 kB	652.0 kB	[文件列表]
ppc64 （非官方移植版）	0.3.6+ds-1	174.4 kB	726.0 kB	[文件列表]
ppc64el	0.3.6+ds-1	176.5 kB	725.0 kB	[文件列表]
riscv64	0.3.6+ds-1	167.7 kB	497.0 kB	[文件列表]
sparc64 （非官方移植版）	0.3.3+ds-1	134.0 kB	543.0 kB	[文件列表]