Package: velvet (1.2.03~nozlibcopy-1)

[ Source: velvet  ]

Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, use::analysing

Other Packages Related to velvet

• dep: dpkg (>= 1.15.6)

  Debian package management system

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.7) [not ia64, kfreebsd-amd64, kfreebsd-i386, s390x]

• dep: libc6.1 (>= 2.7) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

  GCC support library

• dep: libgomp1 (>= 4.4)

  GCC OpenMP (GOMP) support library

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• rec: python

  interactive high-level object-oriented language (default version)

• sug: velvet-example

  Example data for the Velvet sequence assembler

Download velvet

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	674.9 kB	2,106.0 kB	[list of files]
armel	675.5 kB	2,215.0 kB	[list of files]
armhf	679.3 kB	2,017.0 kB	[list of files]
i386	679.2 kB	2,168.0 kB	[list of files]
ia64	796.8 kB	3,569.0 kB	[list of files]
kfreebsd-amd64	673.8 kB	2,013.0 kB	[list of files]
kfreebsd-i386	681.1 kB	2,070.0 kB	[list of files]
mips	665.1 kB	2,224.0 kB	[list of files]
mipsel	666.2 kB	2,225.0 kB	[list of files]
powerpc	661.0 kB	2,136.0 kB	[list of files]
s390	673.2 kB	2,206.0 kB	[list of files]
s390x	671.4 kB	2,197.0 kB	[list of files]
sparc	684.5 kB	2,267.0 kB	[list of files]