Package: t-coffee (9.02.r1228-2 and others)

[ Source: t-coffee  ]

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download t-coffee

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	9.02.r1228-2	1,005.0 kB	2,461.0 kB	[list of files]
amd64	9.02.r1228-2	828.5 kB	1,924.0 kB	[list of files]
armel	9.02.r1228-2	754.9 kB	1,738.0 kB	[list of files]
armhf	9.02.r1228-2	667.8 kB	2,045.0 kB	[list of files]
hppa (unofficial port)	8.84-1	801.3 kB	1,808.0 kB	[list of files]
i386	9.02.r1228-2	789.5 kB	1,965.0 kB	[list of files]
ia64	9.02.r1228-2	1,245.0 kB	3,651.0 kB	[list of files]
kfreebsd-amd64	9.02.r1228-2	828.2 kB	1,893.0 kB	[list of files]
kfreebsd-i386	9.02.r1228-2	788.8 kB	1,933.0 kB	[list of files]
m68k (unofficial port)	9.02.r1228-2	637.9 kB	1,674.0 kB	[list of files]
mips	9.02.r1228-2	784.5 kB	1,995.0 kB	[list of files]
mipsel	9.02.r1228-2	647.0 kB	2,752.0 kB	[list of files]
powerpc	9.02.r1228-2	810.3 kB	1,886.0 kB	[list of files]
powerpcspe (unofficial port)	9.02.r1228-2	848.0 kB	1,945.0 kB	[list of files]
s390	9.02.r1228-2	800.0 kB	1,914.0 kB	[list of files]
s390x	9.02.r1228-2	867.4 kB	2,132.0 kB	[list of files]
sh4 (unofficial port)	9.02.r1228-2	788.0 kB	1,662.0 kB	[list of files]
sparc	9.02.r1228-2	758.8 kB	1,788.0 kB	[list of files]
sparc64 (unofficial port)	9.02.r1228-2	796.2 kB	1,831.0 kB	[list of files]