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[ Source: sibsim4  ]

Package: sibsim4 (0.16-1)

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: 

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Other Packages Related to sibsim4

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.6.1-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb

Download sibsim4

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 35.8 kB112 kB [list of files]
amd64 30.7 kB104 kB [list of files]
arm 29.6 kB92 kB [list of files]
armel 30.9 kB96 kB [list of files]
hppa 31.6 kB96 kB [list of files]
hurd-i386 28.7 kB92 kB [list of files]
i386 29.3 kB92 kB [list of files]
ia64 45.2 kB144 kB [list of files]
kfreebsd-amd64 (unofficial port) 30.7 kB74 kB [list of files]
kfreebsd-i386 (unofficial port) 28.6 kB66 kB [list of files]
m68k 26.1 kB88 kB [list of files]
mips 32.2 kB112 kB [list of files]
mipsel 32.5 kB112 kB [list of files]
powerpc 31.5 kB96 kB [list of files]
s390 31.0 kB96 kB [list of files]
sparc 29.2 kB96 kB [list of files]