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[ Source: seaview  ]

Package: seaview (1:4.2-1 and others) [non-free]

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Other Packages Related to seaview

  • depends
  • recommends
  • suggests
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 [powerpc]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.3) [amd64, hppa, i386]
    dep: libc6 (>= 2.4) [s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [armel, mips, mipsel]
  • dep: libc6.1 (>= 2.4) [alpha]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.7-1) [ia64]
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libfontconfig1 (>= 2.4.0) [not armel, hurd-i386, ia64, mips, mipsel]
    generic font configuration library - runtime
  • dep: libgcc1 (>= 1:4.1.1) [not armel, hppa, hurd-i386]
    GCC support library
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 4.2.1) [hurd-i386]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support library
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1) [not armel]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.3) [armel]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxext6 [not armel, hurd-i386, ia64, mips, mipsel]
    X11 miscellaneous extension library
  • dep: libxft2 (>> 2.1.1) [not armel, hurd-i386, ia64, mips, mipsel]
    FreeType-based font drawing library for X
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: clustalw [not armel, hurd-i386, ia64, mips, mipsel]
    global multiple nucleotide or peptide sequence alignment
  • rec: muscle [not armel, hurd-i386, ia64, mips, mipsel]
    Multiple alignment program of protein sequences
  • rec: phyml [not armel, hurd-i386, ia64, mips, mipsel]
    Phylogenetic estimation using Maximum Likelihood
  • rec: xterm [armel, hurd-i386, ia64, mips, mipsel]
    X terminal emulator
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    Multiple alignment program of protein sequences

Download seaview

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 1:4.2-1 313.9 kB828 kB [list of files]
amd64 1:4.2-1 264.9 kB684 kB [list of files]
armel 1:3.2-1 170.3 kB464 kB [list of files]
hppa 1:4.2-1 288.3 kB700 kB [list of files]
hurd-i386 1:3.2-1 177.3 kB480 kB [list of files]
i386 1:4.2-1 247.0 kB648 kB [list of files]
ia64 1:3.2-1 261.8 kB768 kB [list of files]
mips 1:3.2-1 190.2 kB576 kB [list of files]
mipsel 1:3.2-1 190.1 kB576 kB [list of files]
powerpc 1:4.1-1 274.5 kB712 kB [list of files]
s390 1:4.2-1 263.5 kB672 kB [list of files]
sparc 1:4.2-1 248.1 kB648 kB [list of files]