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Package: proda (1.0-4)

multiple alignment of protein sequences

ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.

ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.

Tags: Biology: biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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  • dep: libgcc1 (>= 1:4.2.1) [not hppa, m68k]
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  • dep: libgcc2 (>= 4.2.1) [m68k]
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  • dep: libgcc4 (>= 4.2.1) [hppa]
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Download proda

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 72.6 kB232 kB [list of files]
amd64 65.3 kB192 kB [list of files]
arm 69.3 kB200 kB [list of files]
armel 64.6 kB184 kB [list of files]
hppa 74.0 kB204 kB [list of files]
i386 61.9 kB184 kB [list of files]
ia64 104.6 kB388 kB [list of files]
kfreebsd-amd64 (unofficial port) 65.6 kB164 kB [list of files]
kfreebsd-i386 (unofficial port) 62.5 kB158 kB [list of files]
m68k 58.0 kB180 kB [list of files]
mips 72.6 kB256 kB [list of files]
mipsel 72.9 kB256 kB [list of files]
powerpc 70.6 kB204 kB [list of files]
s390 62.5 kB184 kB [list of files]
sparc 63.9 kB196 kB [list of files]