[  etch  ] [  etch-m68k  ] [  lenny  ] [  squeeze  ] [  sid  ]
[ Source: probcons  ]

Package: probcons (1.12-4)

PROBabilistic CONSistency-based multiple sequence alignment

Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN. Probcons is published in Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. Genome Research 15: 330-340.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to probcons

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.6.1-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, mips, mipsel, sparc]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [armel, hurd-i386, ia64, powerpc, s390]
    dep: libgcc1 (>= 1:4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1) [m68k]
    Package not available
  • dep: libgcc4 (>= 4.2.1) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.2.1) [armel, hppa, hurd-i386, ia64, m68k, powerpc, s390]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1-4) [alpha, amd64, i386, mips, mipsel, sparc]
    dep: libstdc++6 (>= 4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime

Download probcons

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 231.0 kB484 kB [list of files]
amd64 180.8 kB428 kB [list of files]
armel 177.5 kB404 kB [list of files]
hppa 222.7 kB440 kB [list of files]
hurd-i386 152.1 kB384 kB [list of files]
i386 155.1 kB384 kB [list of files]
ia64 317.3 kB768 kB [list of files]
kfreebsd-amd64 206.4 kB510 kB [list of files]
kfreebsd-i386 165.5 kB394 kB [list of files]
m68k (unofficial port) 149.4 kB336 kB [list of files]
mips 221.4 kB528 kB [list of files]
mipsel 223.0 kB528 kB [list of files]
powerpc 211.6 kB428 kB [list of files]
s390 172.3 kB412 kB [list of files]
sparc 181.6 kB428 kB [list of files]