Software Packages in "sid", Subsection science

abinit (5.3.4.dfsg-3+b1 [mips, mipsel], 5.3.4.dfsg-3 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, powerpc, s390, sparc])
A package for electronic structure calculations
achilles (2-8)
An artificial life and evolution simulator
aeskulap (0.2.2b1-4)
medical image viewer and DICOM network client
alien-hunter (1.7-1)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.0.1-3)
program to perform phylogeny based analyses
altree-examples (1.0.1-3)
example files for ALTree
amap-align (2.2-1)
Protein multiple alignment by sequence annealing
apbs (1.1.0-1+b1 [armel, ia64], 1.1.0-1 [alpha, amd64, avr32, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.0.0-2 [hurd-i386, m68k])
Adaptive Poisson Boltzmann Solver
arb (0.0.20071207.1-7 [i386, powerpc, sparc], 0.0.20071207.1-6 [mipsel]) [non-free]
Integrated package for sequence database handling and analysis
arb-common (0.0.20071207.1-7) [non-free]
Integrated package for sequence database handling and analysis
astronomical-almanac (5.6-3)
astronomical almanac - calculate planet and star positions
autodock (4.2.2.1-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.2.1+rc1-2 [m68k])
analysis of ligand binding to protein structure
autodock-test (4.2.2.1-2)
test files for AutoDock
autodocktools (1.5.4.cvs.20090603-1) [non-free]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.2.1-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.2.1+rc1-2 [m68k])
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.2.1-2)
test files for AutoGrid
avce00 (2.0.0-2)
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avida-base (2.0b7-4.2)
Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-4.2)
qt viewer for avida
avida-viewer (2.0b7-4.2)
ncurses viewer for avida
avogadro (1.0.0-2 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, mips, powerpc, s390, sparc], 1.0.0-1 [hppa, kfreebsd-i386, mipsel], 0.8.1-5 [m68k])
Molecular Graphics and Modelling System
avogadro-data (1.0.0-2)
Molecular Graphics and Modelling System (Data Files)
ballview (1.3.0-1)
A free molecular modeling and molecular graphics tool
bauble (0.9.3-1.1)
biodiversity collection manager software application
bibus (1.5.0-1)
bibliographic database
bioperl (1.6.1-1)
Perl tools for computational molecular biology
bioperl-run (1.6.1-1)
Wrapper modules for BioPerl
biosquid (1.9g+cvs20050121-2)
utilities for biological sequence analysis
bkchem (0.13.0-1)
Python based chemical structures editor
blast2 (1:2.2.21.20090809-1+b1 [armel, ia64], 1:2.2.21.20090809-1 [alpha, amd64, avr32, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1:2.2.18.20080302-4 [m68k])
Basic Local Alignment Search Tool
bodr (8-1)
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-1)
Milkyway@home application for the BOINC client
boinc-app-seti (5.13+cvs20060510-6)
SETI@home application for the BOINC client
boxshade (3.3.1-4)
Pretty-printing of multiple sequence alignments
bwa (0.5.5-1)
Burrows-Wheeler Aligner
caret (5.6.1~dfsg.1-4 [amd64, ia64, sparc], 5.6.1~dfsg.1-1 [i386])
Computerized Anatomical Reconstruction and Editing Toolkit
cassbeam (1.0-8)
A program for Cassegrain antenna modelling
cbflib-bin (0.7.9.1-3)
utilities to manipulate CBF files
celestia (1.5.1+dfsg1-2)
A real-time visual space simulation
celestia-common (1.5.1+dfsg1-2)
Datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.5.1-1) [non-free]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.5.1+dfsg1-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.5.1+dfsg1-1 [m68k])
A real-time visual space simulation (GLUT frontend)
cernlib (2006.dfsg.2-14)
CERNLIB data analysis suite - general use metapackage
cernlib-core (2006.dfsg.2-14)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (2006.dfsg.2-14)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (2006.dfsg.2-5)
CERNLIB Monte Carlo libraries
cgns-convert (2.5.4-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.5.3-3 [hurd-i386, m68k])
CFD General Notation System - Conversion tools
chemtool (1.6.12-1)
Chemical structures drawing program
clustalw (2.0.12-1 [alpha, amd64, armel, hppa, i386, ia64, s390, sparc], 2.0.10-1 [mips, mipsel, powerpc]) [non-free]
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-1) [non-free]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.0.12-1 [alpha, amd64, hppa, i386, s390, sparc], 1.83-4 [armel, ia64, mips, mipsel, powerpc]) [non-free]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
code-saturne (2.0.0.beta2-1)
Code_Saturne
code-saturne-bin (2.0.0.beta2-1)
Code_Saturne
code-saturne-data (2.0.0.beta2-1)
Code_Saturne
code-saturne-doc (2.0.0.beta2-1)
Code_Saturne Preprocessor - Documentation
code-saturne-include (2.0.0.beta2-1)
Code_Saturne Preprocessor - include files
coinor-csdp (6.0.1-1)
A software package for semidefinite programming
coinor-libcgl0 (0.54.2-1)
Cut Generator Library, a library of cutting-plane generators
coinor-libclp0 (1.10.2-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.10.0-1 [m68k])
Coin-or linear programming solver
coinor-libcoinutils0 (2.5.1-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.5.0-1 [m68k])
Coin-or collection of utility classes
coinor-libdylp0 (1.5.0-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.5.0-1 [m68k])
Linear programming solver using the dynamic simplex algorithm
coinor-libosi0 (0.100.2-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.100.0-1 [m68k])
COIN-OR Open Solver Interface
coinor-libvol0 (1.1.7-1)
Coin-or linear programming solver
complearn-gui (1.0.7-1)
interactive 3d data mining tool and demo for universal machine learning
complearn-tools (1.1.5-1.1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.1.5-1 [m68k])
complearn machine-learning command-line utilities
ctsim (5.1.3-2 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 5.1.3-1 [mipsel], 4.5.5-1 [m68k])
Computed tomography simulator
ctsim-help (5.1.3-2)
Online help file for CTSim
dans-gdal-scripts (0.14-1+b1)
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.5.4-3)
The OFFIS DICOM toolkit command line utilities
dialign (2.2.1-3)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-1)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-1)
Common data files for dialign-tx
dicomnifti (2.28.14-1)
converts DICOM files into the NIfTI format
drawmap (2.5-3)
draws customized maps, using raw USGS data files
drawxtl (5.4+dfsg-3)
crystal structure viewer
dsdp (5.8-8 [alpha, amd64, armel, avr32, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.8-6 [hppa, m68k])
Software for Semidefinite Programming
dx (1:4.4.4-2+b4 [armel, ia64], 1:4.4.4-2+b3 [amd64, i386, mipsel, powerpc, s390], 1:4.4.4-2+b2 [alpha, hppa, mips, sparc], 1:4.4.4-2 [m68k])
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-1)
a program to read/write Arc/Info compressed E00 files
easychem (0.6-6 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.6-5 [m68k])
Draw high-quality molecules and 2D chemical formulas
ecs (2.0.0.beta2-1)
Code_Saturne Preprocessor
elmer (5.5.0.svn.4262.dfsg-1 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.5.0.svn.4214.dfsg-2 [hppa])
finite element multiphysics suite - binaries
elmer-common (5.5.0.svn.4262.dfsg-1)
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.0+20090715-1+b1 [armel, ia64], 0.1.0+20090715-1 [alpha, amd64, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.1.0-1 [m68k])
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.0+20090715-1+b1 [armel, hppa, ia64, powerpc], 0.1.0+20090715-1 [alpha, amd64, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, sparc], 0.1.0-1 [m68k])
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (0.1.0+20980715-1)
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.68-1) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.1.0-5 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.0.0-7 [m68k])
the european molecular biology open software suite
emboss-data (6.1.0-5)
data files for the EMBOSS package
emboss-explorer (2.2.0-7)
web-based GUI to EMBOSS
engauge-digitizer (4.1-2)
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-1)
pseudorandom number sequence test program
epigrass (2.0b3~dfsg-2)
scientific tool for simulations and scenario analysis in network epidemiology
exonerate (2.2.0-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.2.0-1 [m68k])
generic tool for pairwise sequence comparison
extrema (4.4.1-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.3.6-1 [m68k])
powerful visualization and data analysis tool
fastdnaml (1.2.2-9 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.2.2-8 [m68k])
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-1)
A faster version of pedigree programs of Linkage
fityk (0.8.9-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 0.8.8-1 [m68k, mipsel])
general-purpose nonlinear curve fitting and data analysis
freecad (0.8.2237-2 [alpha, amd64, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.8.2237-1 [hppa])
An extensible Open Source CAx program (alpha)
fsl (4.1.4-2 [alpha, amd64, i386, ia64, powerpc, s390, sparc], 4.1.1-1 [hppa], 4.0.4-1 [mipsel]) [non-free]
analysis tools for FMRI, MRI and DTI brain imaging
fslview (3.1.2+4.1.4-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.0.2+4.1.2-2 [m68k])
viewer for (f)MRI and DTI data
g3data (1:1.5.3-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1:1.5.3-1 [avr32, m68k])
extract data from scanned graphs
gabedit (2.2.7-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.1.19-1 [m68k])
graphical user interface to Ab Initio packages
gamgi (0.14.2-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.13.10-1 [m68k])
construct, view and analyse atomic structures
gamgi-data (0.14.2-1)
extra data for the gamgi atomic structure display program
garlic (1.6-1)
A visualization program for biomolecules
gausssum (2.2.2-1)
parse and display Gaussian, GAMESS, and etc's output
gchempaint (0.10.9-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.10.4-1 [m68k])
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.10.9-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.10.4-1 [m68k])
lightweight crystal structures visualizer
gcu-bin (0.10.9-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.10.4-1 [m68k])
GNOME chemistry utils (helper applications)
gcu-plugin (0.10.9-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.10.4-1 [m68k])
GNOME chemistry utils (browser plugin)
gcx (1.1-1)
astronomical image processing and photometry gtk+ application
gdal-bin (1.6.2-1 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.5.4-2 [m68k])
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.90-1 [m68k])
molecular and crystal model viewer
gdis-data (0.90-2)
molecular and crystal model viewer (data files)
gdpc (2.2.5-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.2.4-3 [m68k])
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-1)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-8)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-8)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-3)
Periodic Table viewer
genesis (2.2.1-12+b1 [alpha, amd64, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2.2.1-12 [armel, kfreebsd-amd64, kfreebsd-i386, m68k])
general-purpose neural simulator
geotiff-bin (1.2.5-1)
the GeoTIFF library -- tools
gerris (20091109-dfsg.1-1 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, s390, sparc], 20090512-dfsg.1-1 [hppa, mipsel, powerpc], 0.9.2+darcs081022-dfsg.1-5 [m68k])
Gerris Flow Solver
gff2aplot (2.0-5)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-3)
produces PostScript graphical output from GFF-files
glam2 (1064-1)
gapped protein motifs from unaligned sequences
gliese (3.0.95-1) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
gmt (4.5.1-1 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 4.4.0-1 [m68k], 4.2.1-4 [hurd-i386])
Generic Mapping Tools
gperiodic (2.0.10-5)
periodic table application
gpiv (0.6.1-2 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.5.2-3 [hurd-i386, m68k])
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2)
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-1+b1 [amd64, i386, ia64, powerpc], 0.6.0-1 [alpha, armel, hppa, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, s390, sparc], 0.5.2-3 [hurd-i386])
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-1+b1 [amd64, i386, ia64, powerpc], 0.6.0-1 [alpha, armel, hppa, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, s390, sparc])
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.69-3)
convert GPS or GPX file to ESRI Shape file
grass (6.4.0~rc5+39438-1 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 6.4.0~rc3-3 [m68k])
Geographic Resources Analysis Support System
gri (2.12.19-3 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.12.18-1 [m68k], 2.12.17-1 [hurd-i386])
a language for scientific illustration
gromacs (4.0.5-4 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.0.4-1 [m68k])
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.0.5-4)
GROMACS molecular dynamics sim, data and documentation
gromacs-lam (4.0.5-4 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.0.4-1 [m68k])
Molecular dynamics sim, binaries for LAM-MPI parallelization
gromacs-mpich (4.0.5-4 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.0.4-1 [m68k])
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.0.5-4)
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2-1)
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.18-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.17-1 [hppa], 2.13-1 [m68k])
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.18-2)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.18-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.17-1 [hppa], 2.13-1 [m68k])
plugins for Gwyddion SPM analysis tool
h5utils (1.12-2 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.12-1+b1 [hppa], 1.12-1 [hurd-i386], 1.10-7+b1 [m68k])
HDF5 files visualization tools
harminv (1.3.1-3 [alpha, amd64, armel, avr32, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.3.1-2 [hppa, m68k])
extraction of complex frequencies and amplitudes from time series
hdf5-tools (1.8.3-2.1 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.6.6-4 [m68k])
Hierarchical Data Format 5 (HDF5) - Runtime tools
hmmer (2.3.2-5 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 2.1.4 [hurd-i386])
profile hidden Markov models for protein sequence analysis
hmmer-pvm (2.3.2-5)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.4-8)
prints the date in latin
horae (070-1) [contrib]
interactive graphical processing and analysis of EXAFS data
hpcc (1.3.1-1+b1 [ia64], 1.3.1-1 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc])
HPC Challenge Benchmark
ics (1.4.0-2) [debports]
Code_Saturne Graphical User Interface
ifeffit (2:1.2.11d-3 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, s390], 2:1.2.11d-1 [sparc], 2:1.2.10a-5 [hppa]) [contrib]
An interactive program for XAFS analysis
ifrit (3.2.8-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.2.5-1 [m68k])
a powerful tool for visualizing 3-dimensional data sets
imagej (1.43k-1)
Image processing program inspired by NIH Image for the Macintosh
imview (1.1.9c-5 [alpha, amd64, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.1.9c-3 [m68k])
Image viewing and analysis application
indi (4:4.3.2-1 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4:3.5.9-2 [m68k])
Instrument Neutral Distributed Interface for astronomical devices
infernal (1.0.2-1)
inference of RNA secondary structural alignments
israndom (1.0.7-3)
nonclassical randomness test using data compressors
jblas (0.3-1)
A fast linear algebra library for Java
jemboss (6.1.0-5)
graphical user interface to EMBOSS
kalign (2.04-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.04-1 [m68k])
Global and progressive multiple sequence alignment
kalzium (4:4.3.2-1 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4:3.5.9-2 [m68k])
periodic table and chemistry tools for KDE 4
kalzium-data (4:4.3.2-1)
data files for Kalzium
kstars (4:4.3.2-1 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4:3.5.9-2 [m68k])
desktop planetarium for KDE 4
kstars-data (4:4.3.2-1)
data files for KStars desktop planetarium
kxterm (2006.dfsg.2-14 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2006.dfsg.2-2 [m68k])
CERNLIB data analysis suite - KUIP terminal emulator
last-align (87-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 58-1 [m68k])
genome-scale comparison of biological sequences
libarb (0.0.20071207.1-7 [i386, powerpc, sparc], 0.0.20071207.1-6 [mipsel]) [non-free]
Integrated package for sequence database handling and analysis
libbiojava-java (1.7.svn.20090419-3)
Java API to biological data and applications
libbiojava-java-demos (1.7.svn.20090419-3)
Example programs for BioJava
libbiojava1.7-java (1.7.svn.20090419-3)
Java API to biological data and applications
libgeotiff-epsg (1.2.5-1) [non-free]
the GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (2.99.1-1)
Molecular Modelling Library (data files)
libgpib-bin (3.2.11-2)
libgpib support applications and configuration
libgrib-api-data (1.8.0.1-1)
grib_api definition files
liblas-bin (1.2.1-1)
ASPRS LiDAR data translation toolset
libroot-graf2d-postscript5.24 (5.24.00-1)
Postscript/PDF renderer library for ROOT
libroot-gui-ged5.24 (5.24.00-1)
GUI element for editing various ROOT objecs
libroot-proof-proofplayer5.24 (5.24.00-1)
PROOF plugin for ROOT
libroot-proof5.24 (5.24.00-1)
PROOF library for ROOT
libroot-tree-treeplayer5.24 (5.24.00-1)
Library to loop over a ROOT tree
libstxxl1 (1.2.1-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, s390, sparc], 1.2.1-1 [mipsel, powerpc])
C++ STL drop-in replacement for extremely large datasets
lipsia (1.6.0-3 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.6.0-2 [hppa])
analysis suite for MRI and fMRI data
loki (2.4.7.4-4)
MCMC linkage analysis on general pedigrees
mafft (6.716-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 6.240-2 [m68k])
Multiple alignment program for amino acid or nucleotide sequences
maq (0.7.1-3+b1 [armel, hppa, ia64, powerpc], 0.7.1-3 [alpha, amd64, avr32, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, s390, sparc])
maps short fixed-length polymorphic DNA sequence reads to reference sequences
massxpert (2.0.8-1 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 2.0.7-1 [hppa, mipsel])
linear polymer mass spectrometry software
massxpert-data (2.0.8-1)
linear polymer mass spectrometry software - arch-indep data
mayavi2 (3.3.0-1+b1 [armel, ia64], 3.3.0-1 [alpha, amd64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.1.0-1 [m68k])
A scientific visualization package for 2-D and 3-D data
meep (1.1.1-3 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.1.1-2 [hppa], 0.10-2+b1 [m68k])
software package for FDTD simulation
meep-mpi (1.1.1-3 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.1.1-2 [hppa], 0.10-2+b1 [m68k])
software package for FDTD simulation, parallel (mpich) version
melting (4.3c-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.3b-1 [avr32], 4.2h-3 [m68k])
compute the melting temperature of nucleic acid duplex
melting-gui (4.3c-1)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.14+svnfixes~20090912-2 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.12-1 [hurd-i386, m68k])
map editor for OpenStreetMap.org
mgltools-bhtree (1.5.4.cvs.20090603-1) [non-free]
Bhtree library extension module
mgltools-dejavu (1.5.4.cvs.20090603-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.4.cvs.20090603-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.4.cvs.20090603-1) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.4.cvs.20090603-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.4.cvs.20090603-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.4.cvs.20090603-1) [non-free]
opengltk python extension
mgltools-pmv (1.5.4.cvs.20090603-1) [non-free]
Python-based Molecular Viewer
mgltools-pyautodock (1.5.4.cvs.20090603-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.4.cvs.20090603-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.4.cvs.20090603-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario (1.5.4.cvs.20090514-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.4.cvs.20090603-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.4.cvs.20090603-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.4.cvs.20090603-1) [non-free]
Symetry server
mgltools-utpackages (1.5.4.cvs.20090603-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.4.cvs.20090603-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.4.cvs.20090603-1) [non-free]
Python-based Visual Programming Environment
mgltools-volume (1.5.4.cvs.20090603-1) [non-free]
Volume rendering Python package
minc-tools (2.0.18-1+b2 [amd64, armel, ia64], 2.0.18-1+b1 [alpha, hppa, i386, mips, mipsel, s390, sparc], 2.0.18-1 [kfreebsd-amd64, kfreebsd-i386, powerpc], 2.0.15-3 [m68k])
MNI medical image format tools
minisat2 (070721-6)
Fast and lightweight SAT solver
mipe (1.1-3)
Tools to store PCR-derived data
mitools (1.8.0-1)
view, convert and perform basic maths with medical image datasets
mmass (2.4.0-2)
Mass spectrometry tool for proteomics
mn-fit (5.13-7 [alpha, amd64, armel, i386, ia64, mips, mipsel, powerpc, s390, sparc], 5.13-6 [hppa], 5.13-4 [m68k])
interactive analysis package for fitting data and histograms
mn-fit-common (5.13-7)
common files for Mn_Fit
molphy (2.3b3-5) [non-free]
Program Package for MOLecular PHYlogenetics
montecarlo-base (2006.dfsg.2-5)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (2006.dfsg.2-5)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 1.14-5 [avr32], 1.14-4 [m68k], 1.14-2 [mips], 1.13-2 [mipsel])
Semi-empirical Quantum Chemistry Library (binaries)
mozilla-biofox (1.1.5-1)
extension of bioinformatics tools to Iceape and Iceweasel browsers
mpb (1.4.2-13+b1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.4.2-13 [m68k])
MIT Photonic-Bands
mpb-mpi (1.4.2-13+b1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.4.2-13 [m68k])
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.3.1-4+b1 [kfreebsd-i386], 2.3.1-4 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, m68k, mips, mipsel, powerpc, s390, sparc])
The Massively Parallel Quantum Chemistry Program
mpqc-support (2.3.1-4+b1 [kfreebsd-i386], 2.3.1-4 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, m68k, mips, mipsel, powerpc, s390, sparc])
Support programs and tools for MPQC
mrpt-apps (0.7.1svn1147-1+b1 [amd64, armel, i386, ia64, mips, mipsel, powerpc, sparc], 0.7.1svn1147-1 [alpha, hppa, s390])
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (0.7.1svn1147-1+b1 [amd64, armel, i386, ia64, mips, mipsel, powerpc, sparc], 0.7.1svn1147-1 [alpha, hppa, s390])
Mobile Robot Programming Toolkit - All the libraries
mssstest (3.0-2) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.22~dfsg-1 [alpha, amd64, armel, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.20-3 [m68k])
Efficient sequence alignment of full genomes
muscle (3.70+fix1-2)
Multiple alignment program of protein sequences
music-bin (1.0.6-1)
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.0-1 [m68k])
multiple structural alignment of proteins
mustang-testdata (3.2.1-1)
multiple structural alignment of proteins, test data
ncbi-epcr (2.3.12-1 [alpha, amd64, armel, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.2.0-3 [hurd-i386])
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20090809-1)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin (6.1.20090809-1+b1 [armel, ia64], 6.1.20090809-1 [alpha, amd64, avr32, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 6.1.20080302-4 [m68k])
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20090809-1+b1 [armel, ia64], 6.1.20090809-1 [alpha, amd64, avr32, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 6.1.20080302-4 [m68k])
NCBI libraries for biology applications (X-based utilities)
nco (3.9.9-1+b1 [armel, hppa, i386, ia64, powerpc], 3.9.9-1 [alpha, amd64, hurd-i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, sparc], 3.9.0-1 [m68k])
command-line operators to analyze netCDF files
ncview (1.93g-1+b1 [armel, i386, ia64], 1.93g-1 [alpha, amd64, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])
A X11 visual browser for NetCDF format files
necpp (1.4.0+cvs20091005-1 [amd64, i386, ia64, powerpc, s390], 1.3.0+cvs20090101-1 [m68k], 1.2.6+cvs20070816-1.3 [alpha, armel, hppa, mips, mipsel, sparc])
NEC2 Evolution Antenna Modelling System
netcdf-bin (1:3.6.3-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1:3.6.2-3.1 [m68k])
Programs for reading and writing NetCDF files
njplot (2.3-2)
A phylogenetic tree drawing program
objcryst-fox (1.8.2~r1158-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390], 1.8.1.2-2 [sparc], 1.8.0.R1087-1 [m68k])
Free Objects for Xtallography
odin (1.8.0-1)
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-5 [alpha, amd64, armel, avr32, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.2.0~beta2-4 [m68k])
Open Geographic Datastore Interface Library -- utilities
openbabel (2.2.3-1+b1 [armel, ia64], 2.2.3-1 [alpha, amd64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.2.1-1 [m68k])
Chemical toolbox utilities
opencascade-draw (6.3.0.dfsg.1-4)
OpenCASCADE CAE platform shared library
opencascade-wok (6.3.0.dfsg.1-4)
OpenCASCADE CAE platform shared library
openjump (1.0-4) [contrib]
Open Java Unified Mapping Platform JUMP
openmx (3.2.4.dfsg-3)
Package for nano-scale material simulations
openturns-examples (0.13.1-1+b2 [ia64], 0.13.1-1 [alpha, amd64, hppa, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 0.13.0-2 [armel, hurd-i386, mips, mipsel])
examples of OpenTURNS functionalities
openturns-validation (0.13.1-1)
validation files for OpenTURNS
openturns-wrapper (0.13.1-1+b2 [ia64], 0.13.1-1 [alpha, amd64, hppa, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 0.13.0-2 [armel, hurd-i386, mips, mipsel])
example of a wrapper for OpenTURNS
openuniverse (1.0beta3.1+dfsg-1+b1 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.0beta3.1+dfsg-1 [avr32, kfreebsd-amd64, kfreebsd-i386, m68k], 1.0beta3.1-6 [hurd-i386])
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-1)
3D Universe Simulator data files
opj2dat (20080225-2)
OriginLab Origin project files to data files converter
paraview (3.4.0-5 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.4.0-4 [hppa])
Parallel Visualization Application
paw (1:2.14.04.dfsg.2-6 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-6 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-6)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-6)
Physics Analysis Workstation examples and tests
perlprimer (1.1.18-1)
Graphical design of primers for PCR
phylip (1:3.69-1 [alpha, amd64, hppa, i386, s390, sparc], 1:3.68-2 [armel, ia64, mips, mipsel, powerpc]) [non-free]
package of programs for inferring phylogenies
phyml (1:200900706-2+b1 [alpha, armel, ia64, powerpc], 1:200900706-2 [amd64, avr32, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, s390, sparc])
Phylogenetic estimation using Maximum Likelihood
picosat (913-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 846-1 [m68k])
SAT solver with proof and core support
planets (0.1.13-9)
Gravitation simulation of planetary bodies
plink (1.07-1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 1.06-4 [m68k], 1.03p1-1 [mips, mipsel])
whole-genome association analysis toolset
poa (2.0+20060928-2)
Partial Order Alignment for multiple sequence alignment
praat (5.1.7-1)
program for speech analysis and synthesis
primer3 (1.1.4-1)
Tool to design flanking oligo nucleotides for DNA amplification
probcons (1.12-4)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-4)
Extra programs from the probcons package
proda (1.0-7)
multiple alignment of protein sequences
proj (4.7.0-1)
Cartographic projection filter and library (transitional package)
proj-bin (4.7.0-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 4.6.1-5 [m68k])
Cartographic projection library (tools)
psi3 (3.4.0-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.4.0-1 [m68k])
Quantum Chemical Program Suite
psychopy (1.51.00.dfsg-1)
environment for creating psychology stimuli in Python
pymol (1.2r1-3 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.2r1-2 [hppa], 1.1~beta3-2 [m68k])
Molecular Graphics System
qfits-tools (6.2.0-1)
FITS manipulation tools
qmc (0.94-3+b1 [alpha, hppa, hurd-i386, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc], 0.94-3 [amd64, armel, avr32, kfreebsd-amd64, kfreebsd-i386])
Quine McClusky Simplification Tool
qsearch-tools (1.0.8-3 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.0.8-1 [m68k])
qsearch machine-learning command-line utilities
qtdmm (0.8.12-2.1)
GUI for digital multimeter
rasmol (2.7.4.2-5+b2 [ia64], 2.7.4.2-5 [alpha, amd64, armel, avr32, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 2.7.4.2-3 [hurd-i386])
Visualize biological macromolecules
raster3d (2.7s-1+b1 [mips, mipsel], 2.7s-1 [alpha, amd64, armel, hppa, i386, ia64, powerpc, s390, sparc]) [non-free]
tools for generating images of proteins or other molecules
readseq (1-8 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips], 1-7 [avr32, hppa, hurd-i386, m68k, mipsel, powerpc, s390, sparc])
[Biology] Conversion between sequence formats
rnahybrid (2.1-2)
Fast and effective prediction of microRNA/target duplexes
robot-player (2.0.4-3.3 [alpha, amd64, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2.0.4-3 [m68k])
Networked server for robots and sensors
robot-player-dev (2.0.4-3.3)
Networked server for robots and sensors - development package
root-plugin-geom-gdml (5.24.00-1)
GDML import/export module for ROOT geometries
root-plugin-geom-geombuilder (5.24.00-1)
Geometry builder plugin for ROOT
root-plugin-geom-geompainter (5.24.00-1)
Geometry painter plugin for ROOT
root-plugin-graf2d-asimage (5.24.00-1)
AfterImage plugin for ROOT
root-plugin-graf2d-qt (5.24.00-1)
Qt plugin for ROOT
root-plugin-graf2d-x11 (5.24.00-1)
X window system plugin for ROOT
root-plugin-graf3d-x3d (5.24.00-1)
X 3D plugin for ROOT
root-plugin-gui-fitpanel (5.24.00-1)
GUI element for fits plugin for ROOT
root-plugin-gui-guibuilder (5.24.00-1)
GUI editor plug-in for ROOT
root-plugin-gui-qt (5.24.00-1)
Qt plugin for ROOT
root-plugin-gui-sessionviewer (5.24.00-1)
GUI to browse an interactive PROOF session
root-plugin-hist-hbook (5.24.00-1)
Hbook plugin for ROOT
root-plugin-hist-histpainter (5.24.00-1)
Histogram painter plugin for ROOT
root-plugin-hist-spectrumpainter (5.24.00-1)
Spectrum painter plugin for ROOT
root-plugin-io-sql (5.24.00-1)
SQL plugin for ROOT
root-plugin-io-xml (5.24.00-1)
XML reader plugin for ROOT
root-plugin-math-fftw3 (5.24.00-1)
FFTw plugin for ROOT
root-plugin-math-fumili (5.24.00-1)
Fumili plugin for ROOT
root-plugin-math-minuit2 (5.24.00-1)
Minuit version 2 plugin for ROOT
root-plugin-net-globus (5.24.00-1)
Globus plugin for ROOT
root-plugin-net-krb5 (5.24.00-1)
Kerberos (version 5) plugin for ROOT
root-plugin-net-netx (5.24.00-1)
NetX plugin for ROOT
root-plugin-net-xrootd (5.24.00-1)
Plugins for xrootd protocol
root-plugin-proof-peac (5.24.00-1)
PEAC plugin for ROOT - run-time libraries
root-plugin-proof-xproof (5.24.00-1)
XPROOF plugin for ROOT
root-plugin-sql-mysql (5.24.00-1)
MySQL client plugin for ROOT
root-plugin-sql-odbc (5.24.00-1)
ODBC plugin for ROOT
root-plugin-sql-pgsql (5.24.00-1)
PostgreSQL client plugin for ROOT
root-plugin-tree-treeviewer (5.24.00-1)
GUI to browse an a ROOT tree
root-system (5.24.00-1)
metapackage to install all ROOT packages
root-system-bin (5.24.00-1 [amd64, ia64], 5.18.00-2.4 [hppa, i386, mips, mipsel], 5.18.00-2.3+b1 [powerpc])
Numerical data analysis framework - general applications
root-system-common (5.24.00-1)
Common files for ROOT
root-system-proofd (5.24.00-1 [amd64, ia64], 5.18.00-2.4 [hppa, i386, mips, mipsel], 5.18.00-2.3+b1 [powerpc])
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.24.00-1 [amd64, ia64], 5.18.00-2.4 [hppa, i386, mips, mipsel], 5.18.00-2.3+b1 [powerpc])
ROOT remote file server
root-system-xrootd (5.24.00-1 [amd64, ia64], 5.18.00-2.4 [hppa, i386, mips, mipsel], 5.18.00-2.3+b1 [powerpc])
Extented ROOT file server
samtools (0.1.7a~dfsg-1 [alpha, amd64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390], 0.1.6~dfsg-1 [avr32])
processing sequence alignments in SAM and BAM formats
saods9 (4.0b7-2+b1 [mips, mipsel], 4.0b7-2 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, m68k, powerpc, s390, sparc])
image display tool for astronomy
sat4j (2.1.1-1)
Efficient library of SAT solvers in Java
science-astronomy (0.7)
Debian Science Astronomy packages
science-astronomy-dev (0.7)
Debian Science Astronomy-dev packages
science-biology (0.7)
Debian Science Biology packages
science-chemistry (0.7)
Debian Science Chemistry packages
science-config (0.7)
Debian Science Project config package
science-dataacquisition (0.7)
Debian Science data acquisition packages
science-electronics (0.7)
Debian Science Electronics packages
science-engineering (0.7)
Debian Science Engineering packages
science-engineering-dev (0.7)
Debian Science Engineering-dev packages
science-geography (0.7)
Debian Science Geography packages
science-imageanalysis (0.7)
Debian Science image analysis packages
science-linguistics (0.7)
Debian Science Linguistics packages
science-mathematics (0.7)
Debian Science Mathematics packages
science-mathematics-dev (0.7)
Debian Science Mathematics-dev packages
science-meteorology (0.7)
Debian Science Meteorology packages
science-meteorology-dev (0.7)
Debian Science Meteorology-dev packages
science-neuroscience-cognitive (0.7)
Debian Science packages for Cognitive Neuroscience
science-numericalcomputation (0.7)
Debian Science Numerical Computation packages
science-physics (0.7)
Debian Science Physics packages
science-robotics (0.7)
Debian Robotics packages
science-statistics (0.7)
Debian Science Statistics packages
science-tasks (0.7)
Debian Science tasks for tasksel
science-typesetting (0.7)
Debian Science typesetting packages
science-viewing (0.7)
Debian Science data visualisation packages
seaview (1:4.2-1 [alpha, amd64, hppa, i386, s390, sparc], 1:4.1-1 [powerpc], 1:3.2-1 [armel, hurd-i386, ia64, mips, mipsel]) [non-free]
Multiplatform interface for sequence alignment and phylogeny
seesat5 (0.90.10-1.1)
a satellite location program
seqan-apps (1.2-1)
A C++ template library for the analysis of sequences
sextractor (2.4.4-1)
source extractor for astronomical images
shogun-cmdline (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-elwms (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-octave (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-octave-modular (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-python (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-python-modular (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
shogun-r (0.9.1-1 [alpha, amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.9.0-2 [hppa])
Large Scale Machine Learning Toolbox
sibsim4 (0.17-1)
align expressed RNA sequences on a DNA template
sigma-align (1.1.3-1)
Simple greedy multiple alignment of non-coding DNA sequences
sim4 (0.0.20030921-3)
tool for aligning cDNA and genomic DNA
sixpack (1:0.66-3) [contrib]
full-featured package for XAS analysis
slang-xfig (0.2.0~.35-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.2.0~.33-1 [m68k])
produce plots and drawings through Xfig's fig2dev in S-Lang
spass (2.1-4)
An automated theorem prover for first-order logic with equality
spatialite-bin (2.3.0-1)
Geospatial extension for SQLite - tools
ssake (3.4-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.4-1)
example data for SSAKE, a genomic assembler of short reads
ssystem (1.6-18) [debports]
3D solar system simulator
staden-io-lib-utils (1.12.1-1)
programs for maniuplating DNA sequencing files
stage (2.1.1-1 [amd64], 2.0.3-2 [alpha, armel, hppa, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc])
Robot simulation for Player
stardata-common (0.7 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.6 [m68k])
Common framework to manage astronomy packages
starplot (0.95.5-3+b1 [armel, ia64], 0.95.5-3 [alpha, amd64, avr32, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc])
3-dimensional perspective star map viewer
stellarium (0.10.2-1)
real-time photo-realistic sky generator
stellarium-data (0.10.2-1)
datafiles for Stellarium, a real-time photo-realistic sky generator
step (4:4.3.2-1)
interactive physical simulator for KDE 4
survex (1.0.39.1-2.1+b1 [kfreebsd-i386], 1.0.39.1-2.1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, m68k, mips, mipsel, powerpc, s390, sparc])
cave surveying and mapping software
survex-aven (1.0.39.1-2.1+b1 [kfreebsd-i386], 1.0.39.1-2.1 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, m68k, mips, mipsel, powerpc, s390, sparc])
sophisticated cave survey viewer for Survex
survex-svxedit (1.0.39.1-2.1)
survey data editor for Survex
syrthes (3.4.2-dfsg1-3)
Transient thermal simulations in complex solid geometries
t-coffee (8.14-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.72-1 [m68k])
Multiple Sequence Alignment
t-coffee-examples (8.14-1)
annotated examples for the use of T-Coffee
tcd-utils (20061127-2)
convert Tide Constituent Database (TCD) files
tessa (0.3.1-4+b3 [alpha, amd64, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b2 [armel, mips], 0.3.1-4+b1 [kfreebsd-amd64, kfreebsd-i386, m68k])
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-4+b3 [alpha, amd64, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b2 [armel, mips], 0.3.1-4+b1 [kfreebsd-amd64, kfreebsd-i386, m68k])
simulation of 3D optical systems using FDTD on LAM-MPI clusters
therion (5.2.8-1+b1 [alpha, amd64, ia64], 5.2.8-1 [armel, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.5.1+nmu1 [m68k])
Cave surveying - 2D and 3D drawing software
therion-viewer (5.2.8-1+b1 [alpha, amd64, ia64], 5.2.8-1 [armel, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.5.1+nmu1 [m68k])
Cave surveying - 3D viewer for therion models
theseus (1.4.3-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.3.9-1 [m68k])
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-1)
Gene detection in archea and bacteria
transcalc (0.14-5 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.14-4 [avr32, m68k])
microwave and RF transmission line calculator
tree-ppuzzle (5.2-6 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 5.2-5 [armel, avr32, hppa, m68k, mips, mipsel, s390])
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-6 [alpha, amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 5.2-5 [armel, avr32, hppa, m68k, mips, mipsel, s390], 5.2-1 [hurd-i386])
Reconstruction of phylogenetic trees by maximum likelihood
treeviewx (0.5.1-6 [alpha, amd64, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.5.1-5 [m68k])
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
tunnelx (20090624-1)
Cave Survey drawing software
units-filter (3.0-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.9-8 [m68k])
Parser for expressions concerning physical values
v-sim (3.5.0-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.4.4-1 [hppa], 3.4.3-1 [m68k])
Visualize atomic structures
v-sim-common (3.5.0-2)
Visualize atomic structures (support files)
v-sim-plugins (3.5.0-2 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.4.4-1 [hppa], 3.4.3-1 [m68k])
Plugins for V_Sim (a 3D visualization package)
velvet (0.7.55-1 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.7.48-1 [m68k])
Nucleic acid sequence assembler for very short reads
velvet-example (0.7.55-1)
Example data for the Velvet sequence assembler
via-bin (1.6.0-2)
tools for volumetric image analysis
viewmol (2.4.1-15 [alpha, amd64, armel, avr32, hppa, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc], 2.4.1-14 [hurd-i386])
A graphical front end for computational chemistry programs.
weka (3.6.0-2)
Machine learning algorithms for data mining tasks
wise (2.4.1-8 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.4.1-6 [m68k])
comparison of biopolymers, commonly DNA and protein sequences
worldwind (0.5.0-7) [non-free]
3D Virtual Globe
xbs (0-7.3)
3-d models and movies of molecules
xdrawchem (1.9.9-4+b2)
Chemical structures and reactions editor
xmakemol (5.16-4 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.16-1 [m68k])
A program for visualizing atomic and molecular systems
xmakemol-gl (5.16-4 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.16-1 [m68k])
A program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-2)
eXtensible Multi-Dimensional Simulator
xorsa (0.7.0-15 [alpha, amd64, armel, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.7.0-14+b1 [hppa], 0.7.0-13 [m68k])
tool for Celestial Mechanics investigations
xplot (1.19-8 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.19-7.2 [m68k])
A simple x-y column data plotter.
xplot-xplot.org (0.90.7.1-2 [alpha, amd64, armel, avr32, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.90.7.1-1 [m68k])
fast tool to graph and visualize lots of data
xtide (2.10-2 [armel, i386], 2.10-1 [alpha, amd64, avr32, hppa, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.9.5-3 [m68k])
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20070318-3)
Harmonics data for xtide
xtide-data-nonfree (20070318-2) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
yale (5.0.95-1) [non-free]
stellar data set from the Yale Bright Star Catalog
ygraph (0.16~cvs20090218-1)
plot and animate data sets
z88 (13.0.0+dfsg2-1)
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-1)
Finite Element Analysis Program - data
zimpl (3.0.0+dfsg1-4 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 3.0.0+dfsg1-3 [avr32], 3.0.0+dfsg1-2 [hurd-i386, mipsel], 2.09.ds1-1 [m68k])
mathematical modeling language for optimization problems