Package: poa (2.0+20060928-2)

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Download Source Package poa:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
David Paleino (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [www.bioinformatics.ucla.edu]

Similar packages:

Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW. POA is published in Bioinformatics. 2004 Jul 10;20(10):1546-56.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

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dep: libc0.3 (>= 2.7-1) [hurd-i386]

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also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.5-5) [m68k]

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dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
dep: libc6.1 (>= 2.7-1) [alpha, ia64]

GNU C Library: Shared libraries
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sug: blast2

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Architecture	Package Size	Installed Size	Files
alpha	51.2 kB	228 kB	[list of files]
amd64	49.0 kB	196 kB	[list of files]
arm	49.5 kB	208 kB	[list of files]
armel	52.1 kB	204 kB	[list of files]
hppa	48.0 kB	212 kB	[list of files]
hurd-i386	44.1 kB	180 kB	[list of files]
i386	44.1 kB	184 kB	[list of files]
ia64	69.8 kB	368 kB	[list of files]
kfreebsd-amd64 (unofficial port)	49.0 kB	154 kB	[list of files]
kfreebsd-i386 (unofficial port)	44.0 kB	138 kB	[list of files]
m68k	40.6 kB	176 kB	[list of files]
mips	48.0 kB	252 kB	[list of files]
mipsel	49.2 kB	260 kB	[list of files]
powerpc	46.5 kB	208 kB	[list of files]
s390	51.8 kB	208 kB	[list of files]
sparc	45.7 kB	216 kB	[list of files]