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Package: mummer (3.20-2)

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Role: Program

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  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
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    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
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  • dep: libgcc1 (>= 1:4.1.1-21) [not arm, armel, hppa, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [armel]
    dep: libgcc1 (>= 1:4.3) [arm, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    GCC support library
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.2.1) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
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    dep: libstdc++6 (>= 4.2.1-4) [not arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
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Download mummer

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 420.3 kB1328 kB [list of files]
amd64 391.0 kB1168 kB [list of files]
arm 393.6 kB1136 kB [list of files]
armel 370.7 kB1096 kB [list of files]
hppa 433.9 kB1200 kB [list of files]
i386 365.2 kB1080 kB [list of files]
ia64 564.7 kB1944 kB [list of files]
kfreebsd-amd64 (unofficial port) 388.5 kB1066 kB [list of files]
kfreebsd-i386 (unofficial port) 368.7 kB980 kB [list of files]
m68k 356.5 kB1060 kB [list of files]
mips 421.7 kB1380 kB [list of files]
mipsel 422.0 kB1380 kB [list of files]
powerpc 417.4 kB1208 kB [list of files]
s390 375.6 kB1100 kB [list of files]
sparc 380.8 kB1144 kB [list of files]