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Package: kalign (2.04-1)

Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to kalign

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.9) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.3) [amd64, i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [powerpc, s390]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [armel, hppa, mips, mipsel, sparc]
  • dep: libc6.1 (>= 2.3) [ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]

Download kalign

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 89.8 kB268 kB [list of files]
amd64 98.0 kB272 kB [list of files]
armel 103.4 kB268 kB [list of files]
hppa 92.5 kB248 kB [list of files]
hurd-i386 84.9 kB248 kB [list of files]
i386 84.9 kB248 kB [list of files]
ia64 151.9 kB516 kB [list of files]
kfreebsd-amd64 97.7 kB268 kB [list of files]
kfreebsd-i386 84.8 kB220 kB [list of files]
m68k (unofficial port) 70.1 kB228 kB [list of files]
mips 90.7 kB292 kB [list of files]
mipsel 91.2 kB292 kB [list of files]
powerpc 93.1 kB264 kB [list of files]
s390 92.4 kB252 kB [list of files]
sparc 80.9 kB240 kB [list of files]