Package: hmmer (2.3.2-5 and others)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

depends

recommends

suggests

dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.2.4-4) [hurd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.5-5) [m68k]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
dep: libc6.1 (>= 2.7-1) [alpha, ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libpvm3 [not hurd-i386]

Parallel Virtual Machine - shared libraries

rec: biosquid

utilities for biological sequence analysis

sug: hmmer-doc (>= 2.3.2-5)

profile hidden Markov models for protein sequence analysis (docs)
sug: hmmer-pvm (>= 2.3.2-5)

HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha	2.3.2-5	1,345.2 kB	3080 kB	[list of files]
amd64	2.3.2-5	1,191.2 kB	2512 kB	[list of files]
armel	2.3.2-5	1,120.2 kB	2280 kB	[list of files]
hppa	2.3.2-5	1,216.0 kB	2344 kB	[list of files]
hurd-i386	2.1.4	1,589.9 kB	6872 kB	[list of files]
i386	2.3.2-5	1,075.6 kB	2264 kB	[list of files]
ia64	2.3.2-5	1,916.9 kB	5340 kB	[list of files]
kfreebsd-amd64	2.3.2-5	1,190.1 kB	2618 kB	[list of files]
kfreebsd-i386	2.3.2-5	1,069.7 kB	2362 kB	[list of files]
m68k (unofficial port)	2.3.2-5	905.1 kB	2080 kB	[list of files]
mips	2.3.2-5	1,225.8 kB	3052 kB	[list of files]
mipsel	2.3.2-5	1,230.7 kB	3052 kB	[list of files]
powerpc	2.3.2-5	1,214.9 kB	2588 kB	[list of files]
s390	2.3.2-5	1,139.9 kB	2368 kB	[list of files]
sparc	2.3.2-5	1,069.2 kB	2272 kB	[list of files]