Package: hmmer (2.3.2-4 and others)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

depends

recommends

suggests

dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.2.4-4) [hurd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.5-5) [m68k]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
dep: libc6.1 (>= 2.7-1) [alpha, ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libpvm3 [not hurd-i386]

Parallel Virtual Machine - shared libraries

rec: biosquid

utilities for biological sequence analysis
rec: hmmer-doc (>= 2.3.2-4)

profile hidden Markov models for protein sequence analysis (docs)

sug: hmmer-pvm (>= 2.3.2-4)

HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha	2.3.2-4	1,345.2 kB	3080 kB	[list of files]
amd64	2.3.2-4	1,152.2 kB	2400 kB	[list of files]
arm	2.3.2-4	1,048.1 kB	2120 kB	[list of files]
armel	2.3.2-4	1,121.1 kB	2280 kB	[list of files]
hppa	2.3.2-4	1,217.1 kB	2344 kB	[list of files]
hurd-i386	2.1.4	1,589.9 kB	6872 kB	[list of files]
i386	2.3.2-4	1,051.4 kB	2196 kB	[list of files]
ia64	2.3.2-4	1,924.4 kB	5252 kB	[list of files]
kfreebsd-amd64 (unofficial port)	2.3.2-4	1,151.2 kB	2522 kB	[list of files]
kfreebsd-i386 (unofficial port)	2.3.2-4	1,035.7 kB	2250 kB	[list of files]
m68k	2.3.2-4	908.1 kB	2076 kB	[list of files]
mips	2.3.2-4	1,232.3 kB	3116 kB	[list of files]
mipsel	2.3.2-4	1,239.6 kB	3120 kB	[list of files]
powerpc	2.3.2-4	1,200.9 kB	2568 kB	[list of files]
s390	2.3.2-4	1,119.7 kB	2332 kB	[list of files]
sparc	2.3.2-4	1,062.6 kB	2260 kB	[list of files]