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[ Source: hmmer  ]

Package: hmmer (2.3.2-5 and others)

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.2.4-4) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libpvm3 [not hurd-i386]
    Parallel Virtual Machine - shared libraries
  • rec: biosquid
    utilities for biological sequence analysis
  • sug: hmmer-doc (>= 2.3.2-5)
    profile hidden Markov models for protein sequence analysis (docs)
  • sug: hmmer-pvm (>= 2.3.2-5)
    HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.3.2-5 1,345.2 kB3080 kB [list of files]
amd64 2.3.2-5 1,191.2 kB2512 kB [list of files]
armel 2.3.2-5 1,120.2 kB2280 kB [list of files]
hppa 2.3.2-5 1,216.0 kB2344 kB [list of files]
hurd-i386 2.1.4 1,589.9 kB6872 kB [list of files]
i386 2.3.2-5 1,075.6 kB2264 kB [list of files]
ia64 2.3.2-5 1,916.9 kB5340 kB [list of files]
kfreebsd-amd64 2.3.2-5 1,190.1 kB2618 kB [list of files]
kfreebsd-i386 2.3.2-5 1,069.7 kB2362 kB [list of files]
m68k (unofficial port) 2.3.2-5 905.1 kB2080 kB [list of files]
mips 2.3.2-5 1,225.8 kB3052 kB [list of files]
mipsel 2.3.2-5 1,230.7 kB3052 kB [list of files]
powerpc 2.3.2-5 1,214.9 kB2588 kB [list of files]
s390 2.3.2-5 1,139.9 kB2368 kB [list of files]
sparc 2.3.2-5 1,069.2 kB2272 kB [list of files]