[  lenny  ] [  sid  ]
[ Source: exonerate  ]

Package: exonerate (1.4.0-1)

tool for comparison of long biological sequences

Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

Other Packages Related to exonerate

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.6-1) [kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
    dep: libc0.1 (>= 2.6.1-1) [kfreebsd-amd64]
  • dep: libc0.3 (>= 2.6.1-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.6.1-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mipsel]
    dep: libc6 (>= 2.7-1) [mipsel]
  • dep: libc6.1 (>= 2.6.1-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.2.1) [armel]
    GCC support library
  • dep: libglib1.2ldbl (>= 1.2.10-18)
    The GLib library of C routines
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

Download exonerate

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 3,023.8 kB8788 kB [list of files]
amd64 2,800.7 kB7816 kB [list of files]
arm 2,948.6 kB8032 kB [list of files]
armel 3,047.4 kB8216 kB [list of files]
hppa 2,829.5 kB7548 kB [list of files]
hurd-i386 2,484.2 kB7532 kB [list of files]
i386 2,653.5 kB7468 kB [list of files]
ia64 4,197.1 kB19208 kB [list of files]
kfreebsd-amd64 (unofficial port) 2,799.8 kB7794 kB [list of files]
kfreebsd-i386 (unofficial port) 2,483.6 kB7458 kB [list of files]
m68k 1,948.1 kB6448 kB [list of files]
mips 3,001.6 kB9488 kB [list of files]
mipsel 2,950.8 kB9484 kB [list of files]
powerpc 2,765.2 kB8536 kB [list of files]
s390 2,955.5 kB7836 kB [list of files]
sparc 2,526.7 kB7692 kB [list of files]