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Package: embassy-domalign (0.1.0+20090715-1 and others)

Extra EMBOSS commands for protein domain alignment

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Editing, Supports Format: Plain Text

Other Packages Related to embassy-domalign

  • depends
  • recommends
  • suggests
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax5 [m68k]
    EMBOSS library for commands
  • dep: libajax6 [not m68k]
    EMBOSS library for commands
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.0) [i386, mips, mipsel, powerpc, s390]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.2) [hppa]
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.4) [armel]
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.6) [sparc]
  • dep: libc6.1 (>= 2.0) [alpha]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.2) [ia64]
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.2.1) [not m68k]
    FreeType 2 font engine, shared library files
    dep: libfreetype6 (>= 2.3.5) [m68k]
  • dep: libgd2-xpm (>= 2.0.36~rc1~dfsg)
    GD Graphics Library version 2
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus5 [m68k]
    EMBOSS library for molecular sequence analysis
  • dep: libnucleus6 [not m68k]
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: emboss
    the european molecular biology open software suite
  • sug: embassy
    Package not available

Download embassy-domalign

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 0.1.0+20090715-1 108.2 kB672 kB [list of files]
amd64 0.1.0+20090715-1 107.7 kB664 kB [list of files]
armel 0.1.0+20090715-1+b1 107.7 kB656 kB [list of files]
hppa 0.1.0+20090715-1+b1 107.8 kB652 kB [list of files]
i386 0.1.0+20090715-1 105.5 kB648 kB [list of files]
ia64 0.1.0+20090715-1+b1 118.4 kB708 kB [list of files]
kfreebsd-amd64 0.1.0+20090715-1 107.3 kB608 kB [list of files]
kfreebsd-i386 0.1.0+20090715-1 105.6 kB592 kB [list of files]
m68k (unofficial port) 0.1.0-1 104.4 kB648 kB [list of files]
mips 0.1.0+20090715-1 105.4 kB660 kB [list of files]
mipsel 0.1.0+20090715-1 105.0 kB660 kB [list of files]
powerpc 0.1.0+20090715-1+b1 116.0 kB676 kB [list of files]
s390 0.1.0+20090715-1 108.0 kB656 kB [list of files]
sparc 0.1.0+20090715-1 106.8 kB648 kB [list of files]