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[ Source: embassy-domalign  ]

Package: embassy-domalign (0.1.0-1)

Extra EMBOSS commands for protein domain alignment

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).

Other Packages Related to embassy-domalign

  • depends
  • recommends
  • suggests
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax5
    EMBOSS library for commands
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.3.5)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.35.dfsg) [sparc]
    GD Graphics Library version 2
    dep: libgd2-xpm (>= 2.0.36~rc1~dfsg) [not sparc]
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus5
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g [not m68k, sparc]
    compression library - runtime
    dep: zlib1g (>= 1:1.1.4) [m68k]
    dep: zlib1g (>= 1:1.2.3.3.dfsg-1) [sparc]
  • rec: emboss
    The European Molecular Biology Open Software Suite
  • sug: embassy
    Package not available

Download embassy-domalign

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 108.2 kB672 kB [list of files]
amd64 106.4 kB664 kB [list of files]
arm 104.3 kB640 kB [list of files]
armel 107.1 kB648 kB [list of files]
hppa 107.5 kB652 kB [list of files]
i386 104.8 kB648 kB [list of files]
ia64 118.7 kB712 kB [list of files]
kfreebsd-amd64 (unofficial port) 106.4 kB604 kB [list of files]
kfreebsd-i386 (unofficial port) 105.2 kB590 kB [list of files]
m68k 104.4 kB648 kB [list of files]
mips 105.2 kB660 kB [list of files]
mipsel 104.7 kB660 kB [list of files]
powerpc 115.0 kB676 kB [list of files]
s390 107.1 kB656 kB [list of files]
sparc 105.2 kB648 kB [list of files]