[  lenny  ] [  sid  ]
[ Source: embassy-domainatrix  ]

Package: embassy-domainatrix (0.1.0-1)

Extra EMBOSS commands to handle domain classification file

The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domainatrix release are cathparse (generates DCF file from raw CATH files), domainnr (removes redundant domains from a DCF file), domainreso (removes low resolution domains from a DCF file), domainseqs (adds sequence records to a DCF file), domainsse (adds secondary structure records to a DCF file), scopparse (generates DCF file from raw SCOP files) and ssematch (searches a DCF file for secondary structure matches).

Other Packages Related to embassy-domainatrix

  • depends
  • recommends
  • suggests
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax5
    EMBOSS library for commands
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.3.5)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.35.dfsg) [sparc]
    GD Graphics Library version 2
    dep: libgd2-xpm (>= 2.0.36~rc1~dfsg) [not sparc]
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus5
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g [not m68k, sparc]
    compression library - runtime
    dep: zlib1g (>= 1:1.1.4) [m68k]
    dep: zlib1g (>= 1:1.2.3.3.dfsg-1) [sparc]
  • rec: emboss
    The European Molecular Biology Open Software Suite
  • sug: embassy
    Package not available

Download embassy-domainatrix

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 76.5 kB536 kB [list of files]
amd64 76.3 kB528 kB [list of files]
arm 76.8 kB508 kB [list of files]
armel 77.7 kB508 kB [list of files]
hppa 80.7 kB508 kB [list of files]
i386 80.5 kB504 kB [list of files]
ia64 86.1 kB564 kB [list of files]
kfreebsd-amd64 (unofficial port) 79.3 kB448 kB [list of files]
kfreebsd-i386 (unofficial port) 78.0 kB430 kB [list of files]
m68k 77.6 kB504 kB [list of files]
mips 77.7 kB512 kB [list of files]
mipsel 77.3 kB512 kB [list of files]
powerpc 90.4 kB548 kB [list of files]
s390 80.2 kB508 kB [list of files]
sparc 78.2 kB508 kB [list of files]