Package: embassy-domainatrix (0.1.0+20110714-1 and others)

[ Source: embassy-domainatrix  ]

Extra EMBOSS commands to handle domain classification file

The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domainatrix release are cathparse (generates DCF file from raw CATH files), domainnr (removes redundant domains from a DCF file), domainreso (removes low resolution domains from a DCF file), domainseqs (adds sequence records to a DCF file), domainsse (adds secondary structure records to a DCF file), scopparse (generates DCF file from raw SCOP files) and ssematch (searches a DCF file for secondary structure matches).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Application Suite: suite::TODO, use::analysing, Purpose: Data Conversion, Editing, use::searching, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.1.0+20110714-1	96.2 kB	529.0 kB	[list of files]
amd64	0.1.0+20110714-1	96.4 kB	510.0 kB	[list of files]
armel	0.1.0+20110714-1	96.7 kB	492.0 kB	[list of files]
armhf	0.1.0+20110714-1	95.7 kB	484.0 kB	[list of files]
hppa (unofficial port)	0.1.0+20100721-2	90.1 kB	560.0 kB	[list of files]
i386	0.1.0+20110714-1	93.0 kB	496.0 kB	[list of files]
ia64	0.1.0+20110714-1	101.8 kB	464.0 kB	[list of files]
kfreebsd-amd64	0.1.0+20110714-1	96.4 kB	443.0 kB	[list of files]
kfreebsd-i386	0.1.0+20110714-1	95.5 kB	429.0 kB	[list of files]
m68k (unofficial port)	0.1.0-1	77.6 kB	504.0 kB	[list of files]
mips	0.1.0+20110714-1	92.9 kB	495.0 kB	[list of files]
mipsel	0.1.0+20110714-1	91.8 kB	495.0 kB	[list of files]
powerpc	0.1.0+20110714-1	94.7 kB	496.0 kB	[list of files]
powerpcspe (unofficial port)	0.1.0+20100721-3	90.5 kB	560.0 kB	[list of files]
s390	0.1.0+20110714-1	94.1 kB	496.0 kB	[list of files]
s390x	0.1.0+20110714-1	95.9 kB	517.0 kB	[list of files]
sh4 (unofficial port)	0.1.0+20100721-3	92.5 kB	560.0 kB	[list of files]
sparc	0.1.0+20110714-1	91.8 kB	506.0 kB	[list of files]
sparc64 (unofficial port)	0.1.0+20100721-3	92.6 kB	584.0 kB	[list of files]