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[ Source: ncbi-tools6  ]

Package: blast2 (1:2.2.18.20080302-1 and others)

Basic Local Alignment Search Tool

The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user.

Note that databases are not included in Debian; they must be retrieved manually.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching

Other Packages Related to blast2

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.3) [armel]
    GCC support library
  • dep: libncbi6 (<< 6.1.20070822.1) [kfreebsd-amd64, kfreebsd-i386, m68k]
    NCBI libraries for biology applications
    dep: libncbi6 (<< 6.1.20080302.1) [not kfreebsd-amd64, kfreebsd-i386, m68k]
    dep: libncbi6 (>= 6.1.20070822) [kfreebsd-amd64, kfreebsd-i386, m68k]
    dep: libncbi6 (>= 6.1.20080302) [not kfreebsd-amd64, kfreebsd-i386, m68k]
  • sug: libvibrant6a
    NCBI libraries for graphic biology applications
  • sug: ncbi-tools-bin
    NCBI libraries for biology applications (text-based utilities)
  • sug: ncbi-tools-x11
    NCBI libraries for biology applications (X-based utilities)

Download blast2

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 1:2.2.18.20080302-1 682.5 kB1532 kB [list of files]
amd64 1:2.2.18.20080302-1 670.1 kB1353 kB [list of files]
arm 1:2.2.18.20080302-1 616.2 kB1296 kB [list of files]
armel 1:2.2.18.20080302-1 656.7 kB1332 kB [list of files]
hppa 1:2.2.18.20080302-1 633.0 kB1344 kB [list of files]
i386 1:2.2.18.20080302-1 622.2 kB1256 kB [list of files]
ia64 1:2.2.18.20080302-1 728.8 kB1768 kB [list of files]
kfreebsd-amd64 (unofficial port) 1:2.2.17.20070822-4 640.2 kB1304 kB [list of files]
kfreebsd-i386 (unofficial port) 1:2.2.17.20070822-4 619.7 kB1196 kB [list of files]
m68k 1:2.2.17.20070822-5 613.5 kB1296 kB [list of files]
mips 1:2.2.18.20080302-1 657.0 kB1428 kB [list of files]
mipsel 1:2.2.18.20080302-1 633.5 kB1428 kB [list of files]
powerpc 1:2.2.18.20080302-1 684.4 kB1472 kB [list of files]
s390 1:2.2.18.20080302-1 651.6 kB1384 kB [list of files]
sparc 1:2.2.18.20080302-1 628.7 kB1332 kB [list of files]