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Package: autodock (4.0.1-3)

analysis of ligand binding to protein structure

AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account.

The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids.

Other Packages Related to autodock

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [not arm, armel, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [hurd-i386]
    dep: libgcc1 (>= 1:4.3) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.1.1-21) [not armel, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1) [hurd-i386]
    dep: libstdc++6 (>= 4.3) [armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime
  • rec: autogrid
    pre-calculate binding of ligands to their receptor

Download autodock

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 1,494.0 kB1884 kB [list of files]
amd64 1,468.0 kB1820 kB [list of files]
arm 1,479.0 kB1816 kB [list of files]
armel 1,475.5 kB1812 kB [list of files]
hppa 1,496.3 kB1848 kB [list of files]
hurd-i386 1,450.8 kB1788 kB [list of files]
i386 1,449.7 kB1733 kB [list of files]
ia64 1,570.5 kB2228 kB [list of files]
kfreebsd-amd64 (unofficial port) 1,466.1 kB1836 kB [list of files]
kfreebsd-i386 (unofficial port) 1,450.8 kB1804 kB [list of files]
mips 1,501.0 kB1952 kB [list of files]
mipsel 1,499.5 kB1964 kB [list of files]
powerpc 1,476.0 kB1820 kB [list of files]
s390 1,460.7 kB1792 kB [list of files]
sparc 1,470.4 kB1832 kB [list of files]