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[ Source: amap-align  ]

Package: amap-align (2.2-1)

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Other Packages Related to amap-align

  • depends
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  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [not arm, armel, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [hurd-i386]
    dep: libgcc1 (>= 1:4.3) [arm, armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    GCC support library
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.2.1) [hurd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1-4) [not armel, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    dep: libstdc++6 (>= 4.3) [armel, kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
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Download amap-align

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 162.6 kB356 kB [list of files]
amd64 135.6 kB324 kB [list of files]
arm 143.5 kB273 kB [list of files]
armel 130.7 kB304 kB [list of files]
hppa 157.9 kB328 kB [list of files]
hurd-i386 122.8 kB300 kB [list of files]
i386 124.4 kB256 kB [list of files]
ia64 222.6 kB568 kB [list of files]
kfreebsd-amd64 (unofficial port) 139.9 kB320 kB [list of files]
kfreebsd-i386 (unofficial port) 121.7 kB288 kB [list of files]
m68k 112.3 kB296 kB [list of files]
mips 155.7 kB384 kB [list of files]
mipsel 156.4 kB384 kB [list of files]
powerpc 149.5 kB316 kB [list of files]
s390 125.1 kB304 kB [list of files]
sparc 131.5 kB316 kB [list of files]