[  sarge  ] [  etch  ] [  lenny  ] [  sid  ]
[ Source: molphy  ]

Package: molphy (2.3b3-4 and others) [non-free]

Program Package for MOLecular PHYlogenetics

ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language) 

 NucML:  Maximum Likelihood Inference of Nucleic Acid Phylogeny
 ProtST: Basic Statistics of Protein Sequences
 NucST:  Basic Statistics of Nucleic Acid Sequences
 NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl) 
 mollist:  get identifiers list        molrev:   reverse DNA sequences
 molcat:   concatenate sequences       molcut:   get partial sequences
 molmerge: merge sequences             nuc2ptn:  DNA -> Amino acid
 rminsdel: remove INS/DEL sites        molcodon: get specified codon sites
 molinfo:  get varied sites            mol2mol:  MOLPHY format beautifer
 inl2mol:  Interleaved -> MOLPHY       mol2inl:  MOLPHY -> Interleaved
 mol2phy:  MOLPHY -> Sequential        phy2mol:  Sequential -> MOLPHY
 must2mol: MUST -> MOLPHY              etc.

Tags: Field: Biology, Implemented in: C, Role: Program, Scope: Application

Other Packages Related to molphy

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.5-1) [arm, mipsel]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, arm, ia64, mipsel]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies

Download molphy

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.3b3-4 298.4 kB960 kB [list of files]
amd64 2.3b3-4 269.6 kB856 kB [list of files]
arm 2.3b3-3 254.2 kB828 kB [list of files]
hppa 2.3b3-4 287.8 kB868 kB [list of files]
i386 2.3b3-4 234.2 kB808 kB [list of files]
ia64 2.3b3-4 406.9 kB1420 kB [list of files]
mips 2.3b3-4 316.6 kB1024 kB [list of files]
mipsel 2.3b3-3 304.9 kB1016 kB [list of files]
powerpc 2.3b3-4 292.3 kB884 kB [list of files]
s390 2.3b3-4 258.2 kB848 kB [list of files]
sparc 2.3b3-4 262.1 kB836 kB [list of files]