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Package: clustalw (2.0.7-1 and others) [non-free]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

For details and citation purposes see paper "Clustal W and Clustal X version 2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to clustalw

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.1-1) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, ia64, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [not arm, hppa, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.3) [arm]
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.2.1-4) [not m68k]
    The GNU Standard C++ Library v3
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime
  • sug: clustalx
    GUI for Clustal W
  • sug: seaview
    Multiple sequence alignment editor

Download clustalw

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.0.6-1 343.7 kB1028 kB [list of files]
amd64 2.0.6-1 314.6 kB852 kB [list of files]
arm 2.0.6-1 363.1 kB892 kB [list of files]
hppa 2.0.7-1 352.8 kB852 kB [list of files]
i386 2.0.6-1 298.9 kB824 kB [list of files]
ia64 2.0.7-1 440.3 kB1452 kB [list of files]
m68k 1.83-1 147.2 kB364 kB [list of files]
mips 2.0.5-1 339.9 kB1172 kB [list of files]
mipsel 2.0.6-1 318.3 kB1004 kB [list of files]
powerpc 2.0.7-1 324.3 kB844 kB [list of files]
s390 2.0.7-1 301.2 kB792 kB [list of files]
sparc 2.0.6-1 335.6 kB908 kB [list of files]