Package: theseus (1.4.3-2 and others)

Links for theseus

Debian Resources:

Download Source Package theseus:

Maintainers:

External Resources:

Homepage [www.theseus3d.org]

Similar packages:

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, Bioinformatics, Structural Biology, Implemented in: C, User Interface: Command Line, Role: Program, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to theseus

depends

recommends

suggests

dep: hurd [hurd-i386]

The GNU Hurd
also a virtual package provided by hurd-udeb
dep: libatlas3gf-base [m68k]

Automatically Tuned Linear Algebra Software,generic shared

or liblapack3gf

library of linear algebra routines 3 - shared version

or liblapack.so.3gf

virtual package provided by libatlas3gf-2.0, libatlas3gf-3dnow, libatlas3gf-altivec, libatlas3gf-base, libatlas3gf-sse, libatlas3gf-sse2, libatlas3gf-v9, liblapack3gf
dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.9) [hurd-i386]

GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.5) [avr32]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.5-5) [m68k]

dep: libc6 (>= 2.7) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
dep: libc6.1 (>= 2.7) [alpha, ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
dep: libgsl0ldbl (>= 1.9)

GNU Scientific Library (GSL) -- library package
dep: liblapack3gf [not m68k]

library of linear algebra routines 3 - shared version

or liblapack.so.3gf

virtual package provided by libatlas3gf-2.0, libatlas3gf-3dnow, libatlas3gf-altivec, libatlas3gf-base, libatlas3gf-sse, libatlas3gf-sse2, libatlas3gf-v9, liblapack3gf

or libatlas3gf-base

Automatically Tuned Linear Algebra Software,generic shared

sug: clustlaw [not m68k]

Package not available
sug: dialign [not m68k]

Segment-based multiple sequence alignment
sug: kalign [not m68k]

Global and progressive multiple sequence alignment
sug: mafft [not m68k]

Multiple alignment program for amino acid or nucleotide sequences
sug: muscle

Multiple alignment program of protein sequences
sug: t-coffee [not m68k]

Multiple Sequence Alignment

Download theseus

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha	1.4.3-2	1,294.0 kB	1944 kB	[list of files]
amd64	1.4.3-2	1,317.6 kB	2176 kB	[list of files]
armel	1.4.3-2	1,239.8 kB	2016 kB	[list of files]
avr32 (unofficial port)	1.4.3-2	1,245.3 kB	1748 kB	[list of files]
hppa	1.4.3-2	1,269.8 kB	1856 kB	[list of files]
hurd-i386	1.4.3-2	1,120.2 kB	1840 kB	[list of files]
i386	1.4.3-2	1,121.2 kB	1840 kB	[list of files]
ia64	1.4.3-2	1,618.0 kB	3040 kB	[list of files]
kfreebsd-amd64	1.4.3-2	1,315.0 kB	2148 kB	[list of files]
kfreebsd-i386	1.4.3-2	1,120.4 kB	1812 kB	[list of files]
m68k (unofficial port)	1.3.9-1	1,078.3 kB	1808 kB	[list of files]
mips	1.4.3-2	1,339.6 kB	2156 kB	[list of files]
mipsel	1.4.3-2	1,343.2 kB	2156 kB	[list of files]
powerpc	1.4.3-2	1,260.7 kB	1860 kB	[list of files]
s390	1.4.3-2	1,218.5 kB	1944 kB	[list of files]
sparc	1.4.3-2	1,205.7 kB	1836 kB	[list of files]