Package: maq (0.7.1-9 and others)

[ Source: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to maq

• dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: libgcc-s1 (>= 3.0) [sparc64]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, i386, ia64, mips64el, ppc64, ppc64el, riscv64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download maq

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.1-9	304.7 kB	584.0 kB	[list of files]
amd64	0.7.1-9	295.7 kB	543.0 kB	[list of files]
arm64	0.7.1-9	286.7 kB	519.0 kB	[list of files]
armel	0.7.1-9	285.5 kB	530.0 kB	[list of files]
armhf	0.7.1-9	286.9 kB	474.0 kB	[list of files]
hppa (unofficial port)	0.7.1-9	309.5 kB	559.0 kB	[list of files]
i386	0.7.1-9	306.2 kB	575.0 kB	[list of files]
ia64 (unofficial port)	0.7.1-9	329.5 kB	752.0 kB	[list of files]
m68k (unofficial port)	0.7.1-9	297.1 kB	558.0 kB	[list of files]
mips64el	0.7.1-9	296.9 kB	578.0 kB	[list of files]
ppc64 (unofficial port)	0.7.1-9	301.7 kB	647.0 kB	[list of files]
ppc64el	0.7.1-9	304.8 kB	647.0 kB	[list of files]
riscv64	0.7.1-9+b1	298.6 kB	498.0 kB	[list of files]
s390x	0.7.1-9	288.4 kB	547.0 kB	[list of files]
sh4 (unofficial port)	0.7.1-9	318.8 kB	527.0 kB	[list of files]
sparc64 (unofficial port)	0.7.1-9	289.3 kB	546.0 kB	[list of files]
x32 (unofficial port)	0.7.1-9	295.1 kB	539.0 kB	[list of files]