Package: megadepth (1.2.0-4)

[ Source: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0 (>= 0.4.6+dfsg)

  C library for handling bigWig files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	78.3 kB	266.0 kB	[list of files]
arm64	68.9 kB	274.0 kB	[list of files]
armel	68.7 kB	273.0 kB	[list of files]
armhf	69.1 kB	209.0 kB	[list of files]
i386	81.1 kB	273.0 kB	[list of files]
mips64el	68.8 kB	281.0 kB	[list of files]
ppc64el	81.5 kB	338.0 kB	[list of files]
s390x	70.2 kB	262.0 kB	[list of files]