[ Source: ska ]
Package: ska (1.0+dfsg-4)
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External Resources:
- Homepage [github.com]
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Split Kmer Analysis
SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.
Other Packages Related to ska
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64, mips64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download ska
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 143.9 kB | 451.0 kB | [list of files] |
| arm64 | 121.9 kB | 415.0 kB | [list of files] |
| armel | 119.9 kB | 394.0 kB | [list of files] |
| armhf | 124.9 kB | 314.0 kB | [list of files] |
| i386 | 149.6 kB | 482.0 kB | [list of files] |
| mips64el | 125.3 kB | 514.0 kB | [list of files] |
| ppc64el | 138.4 kB | 543.0 kB | [list of files] |
| s390x | 142.4 kB | 463.0 kB | [list of files] |