Package: covtobed (1.3.5+dfsg-2)

[ Source: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g

  compression library - runtime

Download covtobed

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Architecture	Package Size	Installed Size	Files
amd64	49.8 kB	146.0 kB	[list of files]
arm64	44.6 kB	146.0 kB	[list of files]
armel	42.8 kB	125.0 kB	[list of files]
armhf	44.6 kB	97.0 kB	[list of files]
i386	53.4 kB	149.0 kB	[list of files]
mips64el	46.4 kB	215.0 kB	[list of files]
ppc64el	49.7 kB	210.0 kB	[list of files]
s390x	46.3 kB	138.0 kB	[list of files]