Package: clustalx (2.1+lgpl-2)

[ Source: clustalx  ]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c, interface::x11, Role: Program, Scope: Utility, Interface Toolkit: uitoolkit::motif, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

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• dep: libc6 (>= 2.13) [s390x]

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  dep: libc6 (>= 2.2.5) [amd64]

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [armel, armhf, mips, mipsel, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

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  dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

• dep: libqt4-xml (>= 4:4.5.3)

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• dep: libqtcore4 (>= 4:4.6.1)

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• dep: libqtgui4 (>= 4:4.5.3)

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• dep: libstdc++6 (>= 4.6)

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• sug: boxshade

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Download clustalx

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Architecture	Package Size	Installed Size	Files
amd64	555.8 kB	1,376.0 kB	[list of files]
armel	518.8 kB	1,211.0 kB	[list of files]
armhf	476.4 kB	955.0 kB	[list of files]
i386	546.0 kB	1,373.0 kB	[list of files]
ia64	786.1 kB	2,586.0 kB	[list of files]
kfreebsd-amd64	555.7 kB	1,317.0 kB	[list of files]
kfreebsd-i386	545.6 kB	1,313.0 kB	[list of files]
mips	506.3 kB	1,405.0 kB	[list of files]
mipsel	507.5 kB	1,405.0 kB	[list of files]
powerpc	557.5 kB	1,351.0 kB	[list of files]
s390	532.6 kB	1,343.0 kB	[list of files]
s390x	593.8 kB	1,503.0 kB	[list of files]
sparc	544.6 kB	1,337.0 kB	[list of files]