Package: blast2 (1:2.2.26.20120620-2)

[ Source: ncbi-tools6  ]

Basic Local Alignment Search Tool

The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user.

Note that databases are not included in Debian; they must be retrieved manually.

Tags: Biology: Nucleic Acids, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Science: science::calculation, scope::utility, Purpose: Searching, Works with: Biological Sequence

Other Packages Related to blast2

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13-28) [armhf]

  dep: libc6 (>= 2.7) [not armhf, ia64, kfreebsd-amd64, kfreebsd-i386, s390x]

• dep: libc6.1 (>= 2.7) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

  GCC stödbibliotek

• dep: libncbi6 (<< 6.1.20120620.1)

  NCBI libraries for biology applications

  dep: libncbi6 (>= 6.1.20120620)

• sug: libvibrant6a

  NCBI libraries for graphic biology applications

• sug: ncbi-rrna-data

  large rRNA BLAST databases distributed with the NCBI toolkit

• sug: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• sug: ncbi-tools-x11

  NCBI libraries for biology applications (X-based utilities)

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Architecture	Package Size	Installed Size	Files
amd64	666.3 kB	1,285.0 kB	[list of files]
armel	659.0 kB	1,205.0 kB	[list of files]
armhf	619.9 kB	1,105.0 kB	[list of files]
i386	651.4 kB	1,222.0 kB	[list of files]
ia64	738.3 kB	1,586.0 kB	[list of files]
kfreebsd-amd64	651.6 kB	1,228.0 kB	[list of files]
kfreebsd-i386	634.1 kB	1,138.0 kB	[list of files]
mips	625.9 kB	1,188.0 kB	[list of files]
mipsel	621.3 kB	1,188.0 kB	[list of files]
powerpc	651.7 kB	1,222.0 kB	[list of files]
s390	662.8 kB	1,255.0 kB	[list of files]
s390x	671.7 kB	1,356.0 kB	[list of files]
sparc	637.4 kB	1,221.0 kB	[list of files]