Package: ssake (3.5-1)
Links for ssake
Download Source Package ssake:
- Homepage [www.bcgsc.ca]
genomics application for assembling millions of very short DNA sequences
The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.
Other Packages Related to ssake
- dep: perl
- Larry Walls "Practical Extraction and Report Language"
- dep: python
- interactive high-level object-oriented language (default version)
- sug: ssake-examples
- example data for SSAKE, a genomic assembler of short reads