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[ Källkod: seaview  ]

Paket: seaview (1:4.2-1 och andra) [non-free]

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Andra paket besläktade med seaview

  • beror
  • rekommenderar
  • föreslår
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C-bibliotek: Delade bibliotek
    också ett virtuellt paket som tillhandahålls av libc0.3-udeb
  • dep: libc6 [powerpc]
    GNU C-bibliotek: Delade bibliotek
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.3) [amd64, hppa, i386]
    dep: libc6 (>= 2.4) [s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [armel, mips, mipsel]
  • dep: libc6.1 (>= 2.4) [alpha]
    GNU C-bibliotek: Delade bibliotek
    också ett virtuellt paket som tillhandahålls av libc6.1-udeb
    dep: libc6.1 (>= 2.7-1) [ia64]
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libfontconfig1 (>= 2.4.0) [ej armel, hurd-i386, ia64, mips, mipsel]
    generic font configuration library - runtime
  • dep: libgcc1 (>= 1:4.1.1) [ej armel, hppa, hurd-i386]
    GCC stödbibliotek
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 4.2.1) [hurd-i386]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC stödbibliotek
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1) [ej armel]
    GNUs Standard C++-bibliotek v3
    dep: libstdc++6 (>= 4.3) [armel]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    Körtidsbibliotek för att bestämma programs anropskedjor
  • dep: libx11-6
    X11 client-side library
  • dep: libxext6 [ej armel, hurd-i386, ia64, mips, mipsel]
    X11 miscellaneous extension library
  • dep: libxft2 (>> 2.1.1) [ej armel, hurd-i386, ia64, mips, mipsel]
    FreeType-based font drawing library for X
  • dep: zlib1g (>= 1:1.1.4)
    Kompressionsbibliotek - körtidspaket
  • rec: clustalw [ej armel, hurd-i386, ia64, mips, mipsel]
    global multiple nucleotide or peptide sequence alignment
  • rec: muscle [ej armel, hurd-i386, ia64, mips, mipsel]
    Multiple alignment program of protein sequences
  • rec: phyml [ej armel, hurd-i386, ia64, mips, mipsel]
    Phylogenetic estimation using Maximum Likelihood
  • rec: xterm [armel, hurd-i386, ia64, mips, mipsel]
    X terminal emulator
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    Multiple alignment program of protein sequences

Hämta seaview

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Version Paketstorlek Installerad storlek Filer
alpha 1:4.2-1 313,9 kbyte828 kbyte [filförteckning]
amd64 1:4.2-1 264,9 kbyte684 kbyte [filförteckning]
armel 1:3.2-1 170,3 kbyte464 kbyte [filförteckning]
hppa 1:4.2-1 288,3 kbyte700 kbyte [filförteckning]
hurd-i386 1:3.2-1 177,3 kbyte480 kbyte [filförteckning]
i386 1:4.2-1 247,0 kbyte648 kbyte [filförteckning]
ia64 1:3.2-1 261,8 kbyte768 kbyte [filförteckning]
mips 1:3.2-1 190,2 kbyte576 kbyte [filförteckning]
mipsel 1:3.2-1 190,1 kbyte576 kbyte [filförteckning]
powerpc 1:4.1-1 274,5 kbyte712 kbyte [filförteckning]
s390 1:4.2-1 263,5 kbyte672 kbyte [filförteckning]
sparc 1:4.2-1 248,1 kbyte648 kbyte [filförteckning]