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[ Source: plasmidseeker  ]

Package: plasmidseeker (1.3+dfsg-3)

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identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 26.6 kB94.0 kB [list of files]
arm64 26.6 kB94.0 kB [list of files]
armel 26.6 kB94.0 kB [list of files]
armhf 26.6 kB94.0 kB [list of files]
i386 26.6 kB94.0 kB [list of files]
mips64el 26.6 kB94.0 kB [list of files]
mipsel 26.6 kB94.0 kB [list of files]
ppc64el 26.6 kB94.0 kB [list of files]
s390x 26.6 kB94.0 kB [list of files]