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Package: tree-puzzle (5.2-5)

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to tree-puzzle

  • depends
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  • dep: libc6 (>= 2.3) [amd64, hppa, i386, mips, mipsel]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armel, powerpc, s390]
    dep: libc6 (>= 2.6) [sparc]
  • dep: libc6.1 (>= 2.3) [ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libsprng2
    The SPRNG Scalable Parallel RNG library -- library package
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: treetool
    Package not available

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Architecture Package Size Installed Size Files
amd64 142.5 kB340 kB [list of files]
armel 153.0 kB368 kB [list of files]
hppa 154.0 kB360 kB [list of files]
i386 126.1 kB324 kB [list of files]
ia64 212.0 kB668 kB [list of files]
mips 163.2 kB444 kB [list of files]
mipsel 162.6 kB444 kB [list of files]
powerpc 151.3 kB364 kB [list of files]
s390 139.9 kB336 kB [list of files]
sparc 137.6 kB340 kB [list of files]