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Package: theseus (1.4.3-2)

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, Bioinformatics, Structural Biology, Implemented in: C, User Interface: Command Line, Role: Program, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to theseus

  • depends
  • recommends
  • suggests
  • sug: clustlaw
    Package not available
  • sug: dialign
    Segment-based multiple sequence alignment
  • sug: kalign
    Global and progressive multiple sequence alignment
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: muscle
    Multiple alignment program of protein sequences
  • sug: t-coffee
    Multiple Sequence Alignment

Download theseus

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,317.6 kB2176 kB [list of files]
armel 1,239.8 kB2016 kB [list of files]
hppa 1,269.8 kB1856 kB [list of files]
i386 1,121.2 kB1840 kB [list of files]
ia64 1,618.0 kB3040 kB [list of files]
mips 1,339.6 kB2156 kB [list of files]
mipsel 1,343.2 kB2156 kB [list of files]
powerpc 1,260.7 kB1860 kB [list of files]
s390 1,218.5 kB1944 kB [list of files]
sparc 1,205.7 kB1836 kB [list of files]