Package: theseus (1.4.3-2)

[ Source: theseus  ]

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, Bioinformatics, Structural Biology, Implemented in: C, User Interface: Command Line, Role: Program, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to theseus

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.7) [not ia64, kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.7) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgsl0ldbl (>= 1.9)

  GNU Scientific Library (GSL) -- library package

• dep: liblapack3gf

  library of linear algebra routines 3 - shared version

  or liblapack.so.3gf

  virtual package provided by libatlas3gf-base, liblapack3gf

  or libatlas3gf-base

  Automatically Tuned Linear Algebra Software, generic shared

• sug: clustlaw

  Package not available

• sug: dialign

  Segment-based multiple sequence alignment

• sug: kalign

  Global and progressive multiple sequence alignment

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: muscle

  Multiple alignment program of protein sequences

• sug: t-coffee

  Multiple Sequence Alignment

Download theseus

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,317.6 kB	2,176.0 kB	[list of files]
armel	1,239.8 kB	2,016.0 kB	[list of files]
i386	1,121.2 kB	1,840.0 kB	[list of files]
ia64	1,618.0 kB	3,040.0 kB	[list of files]
kfreebsd-amd64	1,315.0 kB	2,148.0 kB	[list of files]
kfreebsd-i386	1,120.4 kB	1,812.0 kB	[list of files]
mips	1,339.6 kB	2,156.0 kB	[list of files]
mipsel	1,343.2 kB	2,156.0 kB	[list of files]
powerpc	1,260.7 kB	1,860.0 kB	[list of files]
s390	1,218.5 kB	1,944.0 kB	[list of files]
sparc	1,205.7 kB	1,836.0 kB	[list of files]